ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	cdc2cAt	CDC2C
ath-u.5	cdc2cAt	CDC2C
ath-r.7	cdc2cAt	CDC2C
ath-e.2	cdc2cAt	CDC2C
ath-m.4.bio	cdc2cAt	CDC2C
ath-m.4.hor	cdc2cAt	CDC2C
ath-m.4.lig	cdc2cAt	CDC2C
ath-m.4.str	cdc2cAt	CDC2C
ath-m.4.tis	cdc2cAt	CDC2C
ath-u.5	IBS1	Protein kinase superfamily protein
ath-u.5	AT1G74330	Protein kinase superfamily protein
bra-r.6	103863843	protein IMPAIRED IN BABA-INDUCED STERILITY 1
bra-r.6	103835889	protein IMPAIRED IN BABA-INDUCED STERILITY 1
bna-r.1	106453934	protein IMPAIRED IN BABA-INDUCED STERILITY 1
ghi-r.1	121206611	protein IMPAIRED IN BABA-INDUCED STERILITY 1
ghi-r.1	107931506	protein IMPAIRED IN BABA-INDUCED STERILITY 1
ghi-r.1	107888566	protein IMPAIRED IN BABA-INDUCED STERILITY 1
cit-r.1	102627065	protein IMPAIRED IN BABA-INDUCED STERILITY 1-like
gma-u.5	100790917	protein IMPAIRED IN BABA-INDUCED STERILITY 1
gma-u.5	100803328	protein IMPAIRED IN BABA-INDUCED STERILITY 1
gma-u.5	100816047	protein IMPAIRED IN BABA-INDUCED STERILITY 1
vvi-u.5	100268091	protein IMPAIRED IN BABA-INDUCED STERILITY 1
vvi-u.5	100852764	protein IMPAIRED IN BABA-INDUCED STERILITY 1
ppo-u.5	7487133	protein IMPAIRED IN BABA-INDUCED STERILITY 1
ppo-u.5	7495996	cyclin-dependent kinase C-2 C
ppo-u.5	18105782	protein IMPAIRED IN BABA-INDUCED STERILITY 1
mtr-u.5	25493849	protein IMPAIRED IN BABA-INDUCED STERILITY 1
sly-u.5	101257252	protein IMPAIRED IN BABA-INDUCED STERILITY 1
sly-u.5	101246005	protein IMPAIRED IN BABA-INDUCED STERILITY 1-like
sot-r.1	102600852	probable serine/threonine-protein kinase At1g54610
sot-r.1	102605724	probable serine/threonine-protein kinase At1g54610
nta-r.1	107792281	protein IMPAIRED IN BABA-INDUCED STERILITY 1
nta-r.1	107772072	protein IMPAIRED IN BABA-INDUCED STERILITY 1
nta-r.1	107775675	protein IMPAIRED IN BABA-INDUCED STERILITY 1
osa-u.5	4343794	protein IMPAIRED IN BABA-INDUCED STERILITY 1
osa-u.5	4352620	probable serine/threonine-protein kinase At1g54610
zma-u.5	100191951	putative protein kinase superfamily protein
zma-u.5	100192893	uncharacterized LOC100192893
zma-u.5	100383830	uncharacterized LOC100383830
tae-r.2	123102453	protein IMPAIRED IN BABA-INDUCED STERILITY 1
tae-r.2	123044340	protein IMPAIRED IN BABA-INDUCED STERILITY 1
tae-r.2	123052206	protein IMPAIRED IN BABA-INDUCED STERILITY 1
hvu-r.1	123425457	protein IMPAIRED IN BABA-INDUCED STERILITY 1-like
hvu-r.1	123399083	protein IMPAIRED IN BABA-INDUCED STERILITY 1-like
sbi-r.1	8068131	probable serine/threonine-protein kinase At1g54610
sbi-r.1	8060631	probable serine/threonine-protein kinase At1g54610
bdi-r.1	100833133	protein IMPAIRED IN BABA-INDUCED STERILITY 1
bdi-r.1	100822826	protein IMPAIRED IN BABA-INDUCED STERILITY 1

Top 50 coexpressed genes to cdc2cAt (ath-m.9 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to cdc2cAt (ath-m.9 coexpression data)

CoexMap"833938"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0016310 [list] [network] phosphorylation

(529 genes)

ISS

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

Protein

NP_198758.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 7, cyto 1, mito 1, cysk 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1

(predict for NP_198758.2)

Subcellular
localization
TargetP

chlo 5, other 5

(predict for NP_198758.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for cdc2cAt	ath-u.5 for cdc2cAt	ath-r.7 for cdc2cAt	ath-e.2 for cdc2cAt	ath-m.4.bio for cdc2cAt	ath-m.4.hor for cdc2cAt	ath-m.4.lig for cdc2cAt	ath-m.4.str for cdc2cAt	ath-m.4.tis for cdc2cAt	ath-u.5 for IBS1	ath-u.5 for AT1G74330	bra-r.6 for 103863843	bra-r.6 for 103835889	bna-r.1 for 106453934	ghi-r.1 for 121206611	ghi-r.1 for 107931506	ghi-r.1 for 107888566	cit-r.1 for 102627065	gma-u.5 for 100790917	gma-u.5 for 100803328	gma-u.5 for 100816047	vvi-u.5 for 100268091	vvi-u.5 for 100852764	ppo-u.5 for 7487133	ppo-u.5 for 7495996	ppo-u.5 for 18105782	mtr-u.5 for 25493849	sly-u.5 for 101257252	sly-u.5 for 101246005	sot-r.1 for 102600852	sot-r.1 for 102605724	nta-r.1 for 107792281	nta-r.1 for 107772072	nta-r.1 for 107775675	osa-u.5 for 4343794	osa-u.5 for 4352620	zma-u.5 for 100191951	zma-u.5 for 100192893	zma-u.5 for 100383830	tae-r.2 for 123102453	tae-r.2 for 123044340	tae-r.2 for 123052206	hvu-r.1 for 123425457	hvu-r.1 for 123399083	sbi-r.1 for 8068131	sbi-r.1 for 8060631	bdi-r.1 for 100833133	bdi-r.1 for 100822826

Ortholog

Ortholog ID: 2176

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

cdc2cAt

IBS1

Function^*

CDC2C

Protein kinase superfamily protein