ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	XRN2	exoribonuclease 2
ath-u.5	XRN2	exoribonuclease 2
ath-r.7	XRN2	exoribonuclease 2
ath-e.2	XRN2	exoribonuclease 2
ath-m.4.bio	XRN2	exoribonuclease 2
ath-m.4.hor	XRN2	exoribonuclease 2
ath-m.4.lig	XRN2	exoribonuclease 2
ath-m.4.str	XRN2	exoribonuclease 2
ath-m.4.tis	XRN2	exoribonuclease 2
ath-u.5	XRN4	exoribonuclease 4
ath-u.5	XRN3	5'-3' exoribonuclease 3
bra-r.6	103852968	5'-3' exoribonuclease 3
bra-r.6	103838732	5'-3' exoribonuclease 4
bra-r.6	103828020	5'-3' exoribonuclease 2
bna-r.1	106390968	5'-3' exoribonuclease 3
bna-r.1	106397301	5'-3' exoribonuclease 3-like
bna-r.1	111215767	5'-3' exoribonuclease 4
ghi-r.1	107943427	5'-3' exoribonuclease 3
ghi-r.1	107901512	5'-3' exoribonuclease 4
ghi-r.1	107902649	5'-3' exoribonuclease 3
cit-r.1	102610368	5'-3' exoribonuclease 4
cit-r.1	102623051	5'-3' exoribonuclease 3
gma-u.5	100783068	5'-3' exoribonuclease 3
gma-u.5	100785683	5'-3' exoribonuclease 3
gma-u.5	100789497	5'-3' exoribonuclease 4
vvi-u.5	100253751	5'-3' exoribonuclease 4
vvi-u.5	100263222	5'-3' exoribonuclease 3
vvi-u.5	100260845	5'-3' exoribonuclease 3
ppo-u.5	7493956	5'-3' exoribonuclease 3
ppo-u.5	18110978	5'-3' exoribonuclease 4
ppo-u.5	18104156	5'-3' exoribonuclease 4
mtr-u.5	112416443	5'-3' exoribonuclease 3
mtr-u.5	112418725	5'-3' exoribonuclease 3
mtr-u.5	112421174	5'-3' exoribonuclease 3
sly-u.5	101248085	5'-3' exoribonuclease 3-like
sly-u.5	XRN4	protein ETHYLENE-INSENSITIVE5
sly-u.5	101258556	5'-3' exoribonuclease 3
sot-r.1	102589619	5'-3' exoribonuclease 3-like
sot-r.1	102604337	5'-3' exoribonuclease 4
sot-r.1	102592073	5'-3' exoribonuclease 3
nta-r.1	107828154	5'-3' exoribonuclease 4-like
nta-r.1	107830742	5'-3' exoribonuclease 3
nta-r.1	107809493	5'-3' exoribonuclease 3
osa-u.5	4324952	5'-3' exoribonuclease 3
osa-u.5	4329368	5'-3' exoribonuclease 2
osa-u.5	4334408	5'-3' exoribonuclease 4
zma-u.5	103649964	5'-3' exoribonuclease 3
zma-u.5	100384297	5'-3' exoribonuclease 4
zma-u.5	103654383	5'-3' exoribonuclease 2
tae-r.2	123184528	5'-3' exoribonuclease 3
hvu-r.1	123400127	5'-3' exoribonuclease 3-like
hvu-r.1	123444770	5'-3' exoribonuclease 3-like
hvu-r.1	123452664	5'-3' exoribonuclease 4-like
sbi-r.1	8085812	5'-3' exoribonuclease 3
sbi-r.1	8083058	5'-3' exoribonuclease 4
sbi-r.1	8058573	5'-3' exoribonuclease 2
bdi-r.1	100835512	5'-3' exoribonuclease 3
bdi-r.1	100823403	5'-3' exoribonuclease 4-like
cre-r.1	CHLRE_16g679900v5	uncharacterized protein
cre-r.1	CHLRE_06g280050v5	uncharacterized protein

Top 50 coexpressed genes to XRN2 (ath-m.9 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to XRN2 (ath-m.9 coexpression data)

CoexMap"834261"

[Cytoscape]

Annotation

functional annotation

KEGG

ath03008 [list] [network] Ribosome biogenesis in eukaryotes (98 genes)

ath03018 [list] [network] RNA degradation (114 genes)

GO BP

GO:0071035 [list] [network] nuclear polyadenylation-dependent rRNA catabolic process	(2 genes)	IMP
GO:0000967 [list] [network] rRNA 5'-end processing	(4 genes)	IMP
GO:0010587 [list] [network] miRNA catabolic process	(8 genes)	IMP
GO:0060149 [list] [network] negative regulation of post-transcriptional gene silencing	(9 genes)	IMP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

IDA IMP ISM

GO MF

GO:0004534 [list] [network] 5'-3' RNA exonuclease activity

(4 genes)

IDA IGI

Protein

NP_001190450.1 [sequence] [blastp]
NP_199069.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, nucl 3, chlo 2, mito 1, cyto_mito 1	(predict for NP_001190450.1)
cyto 4, chlo 3, cyto_nucl 3	(predict for NP_199069.1)

Subcellular
localization
TargetP

other 5, mito 4, scret 3	(predict for NP_001190450.1)
other 5, mito 4, scret 3	(predict for NP_199069.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for XRN2	ath-u.5 for XRN2	ath-r.7 for XRN2	ath-e.2 for XRN2	ath-m.4.bio for XRN2	ath-m.4.hor for XRN2	ath-m.4.lig for XRN2	ath-m.4.str for XRN2	ath-m.4.tis for XRN2	ath-u.5 for XRN4	ath-u.5 for XRN3	bra-r.6 for 103852968	bra-r.6 for 103838732	bra-r.6 for 103828020	bna-r.1 for 106390968	bna-r.1 for 106397301	bna-r.1 for 111215767	ghi-r.1 for 107943427	ghi-r.1 for 107901512	ghi-r.1 for 107902649	cit-r.1 for 102610368	cit-r.1 for 102623051	gma-u.5 for 100783068	gma-u.5 for 100785683	gma-u.5 for 100789497	vvi-u.5 for 100253751	vvi-u.5 for 100263222	vvi-u.5 for 100260845	ppo-u.5 for 7493956	ppo-u.5 for 18110978	ppo-u.5 for 18104156	mtr-u.5 for 112416443	mtr-u.5 for 112418725	mtr-u.5 for 112421174	sly-u.5 for 101248085	sly-u.5 for XRN4	sly-u.5 for 101258556	sot-r.1 for 102589619	sot-r.1 for 102604337	sot-r.1 for 102592073	nta-r.1 for 107828154	nta-r.1 for 107830742	nta-r.1 for 107809493	osa-u.5 for 4324952	osa-u.5 for 4329368	osa-u.5 for 4334408	zma-u.5 for 103649964	zma-u.5 for 100384297	zma-u.5 for 103654383	tae-r.2 for 123184528	hvu-r.1 for 123400127	hvu-r.1 for 123444770	hvu-r.1 for 123452664	sbi-r.1 for 8085812	sbi-r.1 for 8083058	sbi-r.1 for 8058573	bdi-r.1 for 100835512	bdi-r.1 for 100823403	cre-r.1 for CHLRE_16g679900v5	cre-r.1 for CHLRE_06g280050v5

Ortholog

Ortholog ID: 1091

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

XRN2

XRN4

XRN3

XRN4

Function^*

exoribonuclease 2

exoribonuclease 4

5'-3' exoribonuclease 3

5'-3' exoribonuclease 4

5'-3' exoribonuclease 2

5'-3' exoribonuclease 3-like

5'-3' exoribonuclease 4

5'-3' exoribonuclease 3

5'-3' exoribonuclease 4

5'-3' exoribonuclease 3

5'-3' exoribonuclease 4

5'-3' exoribonuclease 3

5'-3' exoribonuclease 4

5'-3' exoribonuclease 3

5'-3' exoribonuclease 4

5'-3' exoribonuclease 3

5'-3' exoribonuclease 4

5'-3' exoribonuclease 3-like

protein ETHYLENE-INSENSITIVE5

5'-3' exoribonuclease 3

5'-3' exoribonuclease 3-like

5'-3' exoribonuclease 4

5'-3' exoribonuclease 3

5'-3' exoribonuclease 4

5'-3' exoribonuclease 4-like

5'-3' exoribonuclease 3

5'-3' exoribonuclease 2

5'-3' exoribonuclease 4

uncharacterized LOC100501093

5'-3' exoribonuclease 3

5'-3' exoribonuclease 3-like

5'-3' exoribonuclease 4-like

5'-3' exoribonuclease 3

5'-3' exoribonuclease 4

5'-3' exoribonuclease 3

5'-3' exoribonuclease 4-like

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03083	Polycomb repressive complex	2
ath04141	Protein processing in endoplasmic reticulum	2
ath03013	Nucleocytoplasmic transport	2
ath03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	2
ath04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	4
bna03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03450	Non-homologous end-joining	3
bna04016	MAPK signaling pathway - plant	2
bna03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	4
bna03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi03018	RNA degradation	2
ghi03040	Spliceosome	2
ghi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2
ghi03040	Spliceosome	2
ghi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi03018	RNA degradation	2
ghi00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
ghi01230	Biosynthesis of amino acids	2
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00600	Sphingolipid metabolism	2
cit04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03083	Polycomb repressive complex	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03018	RNA degradation	2
vvi03440	Homologous recombination	2
vvi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	3
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	2
mtr04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03082	ATP-dependent chromatin remodeling	2
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03082	ATP-dependent chromatin remodeling	2
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	3
sot03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	3
sot03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	2
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00520	Amino sugar and nucleotide sugar metabolism	3
nta04016	MAPK signaling pathway - plant	2
nta00010	Glycolysis / Gluconeogenesis	2
nta00030	Pentose phosphate pathway	2
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	4
nta03030	DNA replication	2
nta03410	Base excision repair	2
nta03450	Non-homologous end-joining	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	2
nta00520	Amino sugar and nucleotide sugar metabolism	2
nta03040	Spliceosome	2
nta04120	Ubiquitin mediated proteolysis	2
nta03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04712	Circadian rhythm - plant	4
osa04075	Plant hormone signal transduction	2
osa03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	2
osa04016	MAPK signaling pathway - plant	2
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	6
tae03013	Nucleocytoplasmic transport	5
tae03083	Polycomb repressive complex	3
tae03250	Viral life cycle - HIV-1	3
tae03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	3
hvu04712	Circadian rhythm - plant	2
hvu03018	RNA degradation	2
hvu04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03250	Viral life cycle - HIV-1	2
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03082	ATP-dependent chromatin remodeling	3
bdi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04136	Autophagy - other	4

Expression

Expression pattern

Entrez Gene ID^*

834261

841891

843900

103852968

103838732

103828020

106397301

111215767

106421638

107943427

107901512

107957582

102610368

102623051

100785683

100793385

100253751

100263222

7493956

18110978

18104156

112421174

112421269

11429796

101248085

100147714

101258556

102589619

102604337

102592073

107808663

107785646

107780231

4324952

4329368

4334408

100384297

103641862

100501093

123071578

123400127

123444770

123452664

8085812

8083058

8071116

100835512

100823403

66056704

5720902

The preparation time of this page was 0.1 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	11	3	3	3	2	3	3	3	3	3	3	3	3	3	1	3	3	2	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to XRN2 (ath-m.9 coexpression data)

Top 50 enrichment test to XRN2 (ath-m.9 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**