ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	AT5G42860	late embryogenesis abundant protein, group 2
ath-u.5	AT5G42860	late embryogenesis abundant protein, group 2
ath-r.7	AT5G42860	late embryogenesis abundant protein, group 2
ath-e.2	AT5G42860	late embryogenesis abundant protein, group 2
ath-m.4.bio	AT5G42860	late embryogenesis abundant protein, group 2
ath-m.4.hor	AT5G42860	late embryogenesis abundant protein, group 2
ath-m.4.lig	AT5G42860	late embryogenesis abundant protein, group 2
ath-m.4.str	AT5G42860	late embryogenesis abundant protein, group 2
ath-m.4.tis	AT5G42860	late embryogenesis abundant protein, group 2
ath-u.5	AT2G41990	late embryogenesis abundant protein
ath-u.5	AT1G45688	uncharacterized protein
bra-r.6	103858409	uncharacterized LOC103858409
bra-r.6	103848363	uncharacterized LOC103848363
bna-r.1	111206475	uncharacterized LOC111206475
bna-r.1	125579458	uncharacterized LOC125579458
ghi-r.1	107887312	uncharacterized LOC107887312
ghi-r.1	107905582	uncharacterized LOC107905582
cit-r.1	102631034	hypothetical protein
cit-r.1	102607477	uncharacterized LOC102607477
gma-u.5	100817846	uncharacterized LOC100817846
gma-u.5	100817451	uncharacterized LOC100817451
gma-u.5	100811519	uncharacterized LOC100811519
vvi-u.5	100254049	uncharacterized LOC100254049
ppo-u.5	18104872	uncharacterized LOC18104872
ppo-u.5	7462873	uncharacterized LOC7462873
ppo-u.5	7470430	uncharacterized LOC7470430
mtr-u.5	11418273	uncharacterized LOC11418273
sly-u.5	101266178	uncharacterized LOC101266178
sly-u.5	101261986	uncharacterized LOC101261986
sly-u.5	101250111	uncharacterized LOC101250111
sot-r.1	102589271	uncharacterized LOC102589271
sot-r.1	102592145	uncharacterized LOC102592145
sot-r.1	102598022	uncharacterized LOC102598022
nta-r.1	107823438	uncharacterized LOC107823438
nta-r.1	107804162	uncharacterized LOC107804162
nta-r.1	107807542	uncharacterized LOC107807542
osa-u.5	4330258	uncharacterized LOC4330258
osa-u.5	4335868	uncharacterized LOC4335868
osa-u.5	4337491	uncharacterized LOC4337491
zma-u.5	103648495	uncharacterized LOC103648495
zma-u.5	100383970	uncharacterized LOC100383970
zma-u.5	100276241	uncharacterized LOC100276241
tae-r.2	123045475	uncharacterized LOC123045475
tae-r.2	123137666	uncharacterized LOC123137666
tae-r.2	123053321	uncharacterized LOC123053321
hvu-r.1	123404221	uncharacterized LOC123404221
hvu-r.1	123428524	uncharacterized LOC123428524
hvu-r.1	123430285	uncharacterized LOC123430285
sbi-r.1	110436242	uncharacterized LOC110436242
sbi-r.1	8074003	uncharacterized LOC8074003
sbi-r.1	8073923	uncharacterized LOC8073923
bdi-r.1	100828851	uncharacterized LOC100828851
bdi-r.1	100833843	uncharacterized LOC100833843
bdi-r.1	100835413	uncharacterized LOC100835413

Top 50 coexpressed genes to AT5G42860 (ath-m.9 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT5G42860 (ath-m.9 coexpression data)

CoexMap"834297"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005802 [list] [network] trans-Golgi network	(279 genes)	IDA
GO:0005886 [list] [network] plasma membrane	(2598 genes)	IDA
GO:0005634 [list] [network] nucleus	(10367 genes)	ISM

GO MF

Protein

NP_199100.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 3, chlo 2, plas 2, cysk_nucl 2, cyto 1, mito 1, vacu 1

(predict for NP_199100.1)

Subcellular
localization
TargetP

chlo 9

(predict for NP_199100.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for AT5G42860	ath-u.5 for AT5G42860	ath-r.7 for AT5G42860	ath-e.2 for AT5G42860	ath-m.4.bio for AT5G42860	ath-m.4.hor for AT5G42860	ath-m.4.lig for AT5G42860	ath-m.4.str for AT5G42860	ath-m.4.tis for AT5G42860	ath-u.5 for AT2G41990	ath-u.5 for AT1G45688	bra-r.6 for 103858409	bra-r.6 for 103848363	bna-r.1 for 111206475	bna-r.1 for 125579458	ghi-r.1 for 107887312	ghi-r.1 for 107905582	cit-r.1 for 102631034	cit-r.1 for 102607477	gma-u.5 for 100817846	gma-u.5 for 100817451	gma-u.5 for 100811519	vvi-u.5 for 100254049	ppo-u.5 for 18104872	ppo-u.5 for 7462873	ppo-u.5 for 7470430	mtr-u.5 for 11418273	sly-u.5 for 101266178	sly-u.5 for 101261986	sly-u.5 for 101250111	sot-r.1 for 102589271	sot-r.1 for 102592145	sot-r.1 for 102598022	nta-r.1 for 107823438	nta-r.1 for 107804162	nta-r.1 for 107807542	osa-u.5 for 4330258	osa-u.5 for 4335868	osa-u.5 for 4337491	zma-u.5 for 103648495	zma-u.5 for 100383970	zma-u.5 for 100276241	tae-r.2 for 123045475	tae-r.2 for 123137666	tae-r.2 for 123053321	hvu-r.1 for 123404221	hvu-r.1 for 123428524	hvu-r.1 for 123430285	sbi-r.1 for 110436242	sbi-r.1 for 8074003	sbi-r.1 for 8073923	bdi-r.1 for 100828851	bdi-r.1 for 100833843	bdi-r.1 for 100835413

Ortholog

Ortholog ID: 932

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

late embryogenesis abundant protein

uncharacterized protein

uncharacterized LOC103839276

uncharacterized LOC106371871

uncharacterized LOC106388508

uncharacterized LOC106388509

uncharacterized LOC107908633

uncharacterized LOC107913241

uncharacterized LOC107927846

hypothetical protein

uncharacterized LOC102607477

uncharacterized LOC100817451

uncharacterized LOC100783160

uncharacterized LOC100787767

uncharacterized LOC100254049

uncharacterized LOC18104872

uncharacterized LOC7470430

uncharacterized LOC7474973

uncharacterized LOC11418273

uncharacterized LOC11414391

uncharacterized LOC25492862

uncharacterized LOC101266178

uncharacterized LOC101261986

uncharacterized LOC101250111

uncharacterized LOC102589271

uncharacterized LOC102592145

uncharacterized LOC102598022

uncharacterized LOC107804162

uncharacterized LOC107807542

uncharacterized LOC142181640

uncharacterized LOC4330258

uncharacterized LOC4335868

uncharacterized LOC4337491

uncharacterized LOC100276241

uncharacterized LOC100191285

uncharacterized LOC100384786

uncharacterized LOC123053321

uncharacterized LOC123055362

uncharacterized LOC123145051

uncharacterized LOC123404221

uncharacterized LOC123428524

uncharacterized LOC123430285

uncharacterized LOC110436242

uncharacterized LOC8074003

uncharacterized LOC8073923

uncharacterized LOC100828851

uncharacterized LOC100833843

uncharacterized LOC100835413

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04016	MAPK signaling pathway - plant	4
ath04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01250	Biosynthesis of nucleotide sugars	3
vvi00520	Amino sugar and nucleotide sugar metabolism	2
vvi00541	Biosynthesis of various nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00670	One carbon pool by folate	3
ppo00270	Cysteine and methionine metabolism	2
ppo01230	Biosynthesis of amino acids	2
ppo01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00710	Carbon fixation by Calvin cycle	2
mtr01200	Carbon metabolism	2
mtr04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00073	Cutin, suberine and wax biosynthesis	2
sly00904	Diterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01200	Carbon metabolism	3
sot00710	Carbon fixation by Calvin cycle	2
sot01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00053	Ascorbate and aldarate metabolism	2
nta00520	Amino sugar and nucleotide sugar metabolism	2
nta01240	Biosynthesis of cofactors	2
nta01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	2
zma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00500	Starch and sucrose metabolism	3
hvu04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00010	Glycolysis / Gluconeogenesis	3
sbi00052	Galactose metabolism	3
sbi00591	Linoleic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00940	Phenylpropanoid biosynthesis	2

Expression

Expression pattern

Entrez Gene ID^*

818799

841102

103839276

106371871

106388508

106388509

107908633

107913241

107927846

102631034

102607477

100817451

100783160

100787767

100254049

18104872

7470430

7474973

11418273

11414391

25492862

101266178

101261986

101250111

102589271

102592145

102598022

107804162

107807542

142181640

4330258

4335868

4337491

100276241

100191285

100384786

123053321

123055362

123145051

123404221

123428524

123430285

110436242

8074003

8073923

100828851

100833843

100835413

The preparation time of this page was 0.2 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	11	2	2	2	2	3	1	3	1	3	3	3	3	3	3	3	3	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT5G42860 (ath-m.9 coexpression data)

Top 50 enrichment test to AT5G42860 (ath-m.9 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**