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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   RCF3   RNA-binding KH domain-containing protein 
 ath-u.5   RCF3   RNA-binding KH domain-containing protein 
 ath-r.7   RCF3   RNA-binding KH domain-containing protein 
 ath-e.2   RCF3   RNA-binding KH domain-containing protein 
 ath-m.4.bio   RCF3   RNA-binding KH domain-containing protein 
 ath-m.4.hor   RCF3   RNA-binding KH domain-containing protein 
 ath-m.4.lig   RCF3   RNA-binding KH domain-containing protein 
 ath-m.4.str   RCF3   RNA-binding KH domain-containing protein 
 ath-m.4.tis   RCF3   RNA-binding KH domain-containing protein 
 bra-r.6   103844788   RNA-binding KH domain-containing protein RCF3 
 bna-r.1   106367540   RNA-binding KH domain-containing protein RCF3-like 
 bna-r.1   106430534   RNA-binding KH domain-containing protein RCF3-like 
 bna-r.1   106391664   RNA-binding KH domain-containing protein RCF3 
 ghi-r.1   107929548   RNA-binding KH domain-containing protein RCF3 
 ghi-r.1   107947231   RNA-binding KH domain-containing protein RCF3 
 cit-r.1   102612938   RNA-binding KH domain-containing protein RCF3 
 gma-u.5   100804167   RNA-binding KH domain-containing protein RCF3 
 gma-u.5   100782999   RNA-binding KH domain-containing protein RCF3 
 vvi-u.5   100258944   RNA-binding KH domain-containing protein RCF3 
 ppo-u.5   7496406   RNA-binding KH domain-containing protein RCF3 
 ppo-u.5   7464536   RNA-binding KH domain-containing protein RCF3 
 mtr-u.5   11423660   RNA-binding KH domain-containing protein RCF3 
 sly-u.5   101261995   RNA-binding KH domain-containing protein RCF3 
 sot-r.1   102596441   KH domain-containing protein At4g18375 
 nta-r.1   107760363   RNA-binding KH domain-containing protein RCF3 
 nta-r.1   107793339   RNA-binding KH domain-containing protein RCF3 
 osa-u.5   4340961   RNA-binding KH domain-containing protein RCF3 
 zma-u.5   103638431   RNA-binding KH domain-containing protein RCF3 
 zma-u.5   100383161   uncharacterized LOC100383161 
 tae-r.2   123166542   RNA-binding KH domain-containing protein RCF3-like 
 tae-r.2   123156346   RNA-binding KH domain-containing protein RCF3 
 tae-r.2   123147739   RNA-binding KH domain-containing protein RCF3 
 hvu-r.1   123407590   RNA-binding KH domain-containing protein RCF3 
 sbi-r.1   8073044   RNA-binding KH domain-containing protein RCF3 
 bdi-r.1   100821287   RNA-binding KH domain-containing protein RCF3 

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Top 50 coexpressed genes to RCF3 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RCF3 (ath-m.9 coexpression data)

CoexMap"835386"


athRCF3 | Entrez gene ID : 835386      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 3 2 1 2 1 2 1 1 1 2 1 2 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0031053 [list] [network] primary miRNA processing  (9 genes)  IMP  
GO:1900150 [list] [network] regulation of defense response to fungus  (39 genes)  IMP  
GO:0010286 [list] [network] heat acclimation  (64 genes)  IMP  
GO:0009867 [list] [network] jasmonic acid mediated signaling pathway  (74 genes)  IMP  
GO:0006970 [list] [network] response to osmotic stress  (578 genes)  IMP  
GO:0010468 [list] [network] regulation of gene expression  (2062 genes)  IMP  
GO CC
GO:0010445 [list] [network] nuclear dicing body  (7 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0070878 [list] [network] primary miRNA binding  (3 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001190526.1 [sequence] [blastp]
NP_001330551.1 [sequence] [blastp]
NP_200118.3 [sequence] [blastp]
Subcellular
localization
wolf
nucl 3,  cyto 2,  nucl_plas 2,  plas 1,  E.R. 1,  cysk_nucl 1,  cyto_pero 1,  E.R._plas 1  (predict for NP_001190526.1)
nucl 4,  cyto 4,  cyto_nucl 4  (predict for NP_001330551.1)
cyto 4,  nucl 3,  chlo 1,  cysk_nucl 1  (predict for NP_200118.3)
Subcellular
localization
TargetP
other 8,  mito 3  (predict for NP_001190526.1)
other 8,  mito 3  (predict for NP_001330551.1)
other 8,  mito 3  (predict for NP_200118.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
RCF3
ath-u.5
for
RCF3
ath-r.7
for
RCF3
ath-e.2
for
RCF3
ath-m.4.bio
for
RCF3
ath-m.4.hor
for
RCF3
ath-m.4.lig
for
RCF3
ath-m.4.str
for
RCF3
ath-m.4.tis
for
RCF3
bra-r.6
for
103844788
bna-r.1
for
106367540
bna-r.1
for
106430534
bna-r.1
for
106391664
ghi-r.1
for
107929548
ghi-r.1
for
107947231
cit-r.1
for
102612938
gma-u.5
for
100804167
gma-u.5
for
100782999
vvi-u.5
for
100258944
ppo-u.5
for
7496406
ppo-u.5
for
7464536
mtr-u.5
for
11423660
sly-u.5
for
101261995
sot-r.1
for
102596441
nta-r.1
for
107760363
nta-r.1
for
107793339
osa-u.5
for
4340961
zma-u.5
for
103638431
zma-u.5
for
100383161
tae-r.2
for
123166542
tae-r.2
for
123156346
tae-r.2
for
123147739
hvu-r.1
for
123407590
sbi-r.1
for
8073044
bdi-r.1
for
100821287


Ortholog ID: 8198
Species ath bra bna bna bna ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma zma tae tae tae hvu sbi bdi
Symbol RCF3 LOC103844788 LOC106367540 LOC106430534 LOC106413591 LOC107929548 LOC107947231 LOC102612938 LOC100804167 LOC100782999 LOC100258944 LOC7496406 LOC7464536 LOC11423660 LOC101261995 LOC102596441 LOC107760363 LOC107793339 LOC4340961 LOC103638431 LOC100383161 LOC123166542 LOC123156346 LOC123147739 LOC123407590 LOC8073044 LOC100821287
Function* RNA-binding KH domain-containing protein RNA-binding KH domain-containing protein RCF3 RNA-binding KH domain-containing protein RCF3-like RNA-binding KH domain-containing protein RCF3-like RNA-binding KH domain-containing protein RCF3-like RNA-binding KH domain-containing protein RCF3 RNA-binding KH domain-containing protein RCF3 RNA-binding KH domain-containing protein RCF3 RNA-binding KH domain-containing protein RCF3 RNA-binding KH domain-containing protein RCF3 RNA-binding KH domain-containing protein RCF3 RNA-binding KH domain-containing protein RCF3 RNA-binding KH domain-containing protein RCF3 RNA-binding KH domain-containing protein RCF3 RNA-binding KH domain-containing protein RCF3 KH domain-containing protein At4g18375 RNA-binding KH domain-containing protein RCF3 RNA-binding KH domain-containing protein RCF3 RNA-binding KH domain-containing protein RCF3 RNA-binding KH domain-containing protein RCF3 uncharacterized LOC100383161 RNA-binding KH domain-containing protein RCF3-like RNA-binding KH domain-containing protein RCF3 RNA-binding KH domain-containing protein RCF3 RNA-binding KH domain-containing protein RCF3 RNA-binding KH domain-containing protein RCF3 RNA-binding KH domain-containing protein RCF3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00562 Inositol phosphate metabolism 3
ghi04070 Phosphatidylinositol signaling system 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
ghi00562 Inositol phosphate metabolism 2
ghi04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 3
mtr00510 N-Glycan biosynthesis 3
mtr04141 Protein processing in endoplasmic reticulum 3
mtr00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 3
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03250 Viral life cycle - HIV-1 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae03015 mRNA surveillance pathway 3
tae03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835386 103844788 106367540 106430534 106413591 107929548 107947231 102612938 100804167 100782999 100258944 7496406 7464536 11423660 101261995 102596441 107760363 107793339 4340961 103638431 100383161 123166542 123156346 123147739 123407590 8073044 100821287
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