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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   AT5G55040   DNA-binding bromodomain-containing protein 
 ath-u.5   AT5G55040   DNA-binding bromodomain-containing protein 
 ath-r.7   AT5G55040   DNA-binding bromodomain-containing protein 
 ath-e.2   AT5G55040   DNA-binding bromodomain-containing protein 
 ath-m.4.bio   AT5G55040   DNA-binding bromodomain-containing protein 
 ath-m.4.hor   AT5G55040   DNA-binding bromodomain-containing protein 
 ath-m.4.lig   AT5G55040   DNA-binding bromodomain-containing protein 
 ath-m.4.str   AT5G55040   DNA-binding bromodomain-containing protein 
 ath-m.4.tis   AT5G55040   DNA-binding bromodomain-containing protein 
 ghi-r.1   107932763   bromodomain-containing protein 9 
 ghi-r.1   121227846   bromodomain-containing protein 9 
 cit-r.1   102624873   uncharacterized LOC102624873 
 gma-u.5   100799986   uncharacterized LOC100799986 
 gma-u.5   100799455   uncharacterized LOC100799455 
 vvi-u.5   100267501   uncharacterized LOC100267501 
 mtr-u.5   11428851   uncharacterized LOC11428851 
 mtr-u.5   11428264   uncharacterized LOC11428264 
 sly-u.5   101245078   uncharacterized LOC101245078 
 sot-r.1   102606294   uncharacterized LOC102606294 
 nta-r.1   107792711   uncharacterized LOC107792711 
 nta-r.1   107794267   uncharacterized LOC107794267 
 cre-r.1   CHLRE_04g225950v5   uncharacterized protein 

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Top 50 coexpressed genes to AT5G55040 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G55040 (ath-m.9 coexpression data)

CoexMap"835595"


athAT5G55040 | Entrez gene ID : 835595      
Species ath ghi cit gma vvi mtr sly sot nta cre bdi osa tae bna ppo zma sbi bra hvu
Paralog 9 2 1 2 1 2 1 1 2 1 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03082 [list] [network] ATP-dependent chromatin remodeling (64 genes)
GO BP
GO:1905613 [list] [network] regulation of developmental vegetative growth  (6 genes)  IGI  
GO:2000028 [list] [network] regulation of photoperiodism, flowering  (101 genes)  IMP  
GO CC
GO:0016514 [list] [network] SWI/SNF complex  (8 genes)  IPI  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001119438.1 [sequence] [blastp]
NP_200315.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  chlo 1,  plas 1,  cysk 1,  cysk_plas 1  (predict for NP_001119438.1)
nucl 8,  chlo 1,  plas 1,  cysk 1,  cysk_plas 1  (predict for NP_200315.2)
Subcellular
localization
TargetP
mito 8  (predict for NP_001119438.1)
mito 8  (predict for NP_200315.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
AT5G55040
ath-u.5
for
AT5G55040
ath-r.7
for
AT5G55040
ath-e.2
for
AT5G55040
ath-m.4.bio
for
AT5G55040
ath-m.4.hor
for
AT5G55040
ath-m.4.lig
for
AT5G55040
ath-m.4.str
for
AT5G55040
ath-m.4.tis
for
AT5G55040
ghi-r.1
for
107932763
ghi-r.1
for
121227846
cit-r.1
for
102624873
gma-u.5
for
100799986
gma-u.5
for
100799455
vvi-u.5
for
100267501
mtr-u.5
for
11428851
mtr-u.5
for
11428264
sly-u.5
for
101245078
sot-r.1
for
102606294
nta-r.1
for
107792711
nta-r.1
for
107794267
cre-r.1
for
CHLRE_04g225950v5


Ortholog ID: 12940
Species ath ghi ghi cit gma gma gma vvi mtr mtr sly sot nta nta cre
Symbol AT5G55040 LOC107932763 LOC121227846 LOC102624873 LOC100799455 LOC100793896 LOC100792844 LOC100267501 LOC11428851 LOC11428264 LOC101245078 LOC102606294 LOC107792711 LOC107794267 CHLRE_04g225950v5
Function* DNA-binding bromodomain-containing protein bromodomain-containing protein 9 bromodomain-containing protein 9 uncharacterized LOC102624873 uncharacterized LOC100799455 uncharacterized LOC100793896 uncharacterized LOC100792844 uncharacterized LOC100267501 uncharacterized LOC11428851 uncharacterized LOC11428264 uncharacterized LOC101245078 uncharacterized LOC102606294 uncharacterized LOC107792711 uncharacterized LOC107794267 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 4
gma00513 Various types of N-glycan biosynthesis 3
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 4
gma03040 Spliceosome 4
gma03013 Nucleocytoplasmic transport 2
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 3
sot03082 ATP-dependent chromatin remodeling 2
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00600 Sphingolipid metabolism 2
nta04142 Lysosome 2
nta04144 Endocytosis 2
nta05100 Bacterial invasion of epithelial cells 2
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00600 Sphingolipid metabolism 2
nta04142 Lysosome 2
nta04144 Endocytosis 2
nta05100 Bacterial invasion of epithelial cells 2
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 2
cre03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835595 107932763 121227846 102624873 100799455 100793896 100792844 100267501 11428851 11428264 101245078 102606294 107792711 107794267 5717802
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