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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   TOC1   CCT motif -containing response regulator protein 
 ath-u.5   TOC1   CCT motif -containing response regulator protein 
 ath-r.7   TOC1   CCT motif -containing response regulator protein 
 ath-e.2   TOC1   CCT motif -containing response regulator protein 
 ath-m.4.bio   TOC1   CCT motif -containing response regulator protein 
 ath-m.4.hor   TOC1   CCT motif -containing response regulator protein 
 ath-m.4.lig   TOC1   CCT motif -containing response regulator protein 
 ath-m.4.str   TOC1   CCT motif -containing response regulator protein 
 ath-m.4.tis   TOC1   CCT motif -containing response regulator protein 
 bra-r.6   103837378   two-component response regulator-like APRR1 
 bra-r.6   103860589   two-component response regulator-like APRR1 
 bna-r.1   106439924   two-component response regulator-like APRR1 
 bna-r.1   106382203   two-component response regulator-like APRR1 
 bna-r.1   106428080   two-component response regulator-like APRR1 
 ghi-r.1   107949814   two-component response regulator-like APRR1 
 ghi-r.1   107918396   two-component response regulator-like APRR1 
 ghi-r.1   107929780   two-component response regulator-like APRR1 
 cit-r.1   102626186   two-component response regulator-like APRR1 
 gma-u.5   100786522   two-component response regulator-like APRR1 
 gma-u.5   100813917   two-component response regulator-like APRR1 
 gma-u.5   100799728   two-component response regulator-like APRR1 
 vvi-u.5   100258790   two-component response regulator-like APRR1 
 ppo-u.5   18105787   two-component response regulator-like APRR1 
 mtr-u.5   25488813   two-component response regulator-like APRR1 
 mtr-u.5   25493836   two-component response regulator-like APRR1 
 sly-u.5   101259425   two-component response regulator-like APRR1 
 sly-u.5   101259163   two-component response regulator-like APRR1 
 sot-r.1   102582324   two-component response regulator-like APRR1 
 sot-r.1   102593655   two-component response regulator-like APRR1 
 nta-r.1   107818975   two-component response regulator-like APRR1 
 nta-r.1   107802838   two-component response regulator-like APRR1 
 osa-u.5   4330000   two-component response regulator-like PRR1 
 zma-u.5   103651094   two-component response regulator-like PRR1 
 zma-u.5   103633683   two-component response regulator-like PRR1 
 zma-u.5   100281433   uncharacterized LOC100281433 
 tae-r.2   123137489   two-component response regulator-like PRR1 
 tae-r.2   123127760   two-component response regulator-like PRR1 
 tae-r.2   123144843   two-component response regulator-like PRR1 
 hvu-r.1   123401310   two-component response regulator-like PRR1 
 sbi-r.1   8072479   two-component response regulator-like PRR1 
 bdi-r.1   100831155   two-component response regulator-like PRR1 
 cre-r.1   CHLRE_16g676421v5   uncharacterized protein 

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Top 50 coexpressed genes to TOC1 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to TOC1 (ath-m.9 coexpression data)

CoexMap"836259"


athTOC1 | Entrez gene ID : 836259      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 3 1 3 1 1 2 2 2 2 1 3 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04712 [list] [network] Circadian rhythm - plant (43 genes)
GO BP
GO:0010031 [list] [network] circumnutation  (6 genes)  IMP  
GO:0009736 [list] [network] cytokinin-activated signaling pathway  (66 genes)  IEA  
GO:0007623 [list] [network] circadian rhythm  (124 genes)  IEP TAS  
GO:0006351 [list] [network] DNA-templated transcription  (160 genes)  TAS  
GO:0010629 [list] [network] negative regulation of gene expression  (323 genes)  IDA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  ISS TAS  
GO:0010468 [list] [network] regulation of gene expression  (2062 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM TAS  
GO MF
GO:0000156 [list] [network] phosphorelay response regulator activity  (33 genes)  ISS  
GO:0000976 [list] [network] transcription cis-regulatory region binding  (716 genes)  IDA  
GO:0003677 [list] [network] DNA binding  (1274 genes)  IDA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_200946.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_200946.1)
Subcellular
localization
TargetP
other 9  (predict for NP_200946.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
TOC1
ath-u.5
for
TOC1
ath-r.7
for
TOC1
ath-e.2
for
TOC1
ath-m.4.bio
for
TOC1
ath-m.4.hor
for
TOC1
ath-m.4.lig
for
TOC1
ath-m.4.str
for
TOC1
ath-m.4.tis
for
TOC1
bra-r.6
for
103837378
bra-r.6
for
103860589
bna-r.1
for
106439924
bna-r.1
for
106382203
bna-r.1
for
106428080
ghi-r.1
for
107949814
ghi-r.1
for
107918396
ghi-r.1
for
107929780
cit-r.1
for
102626186
gma-u.5
for
100786522
gma-u.5
for
100813917
gma-u.5
for
100799728
vvi-u.5
for
100258790
ppo-u.5
for
18105787
mtr-u.5
for
25488813
mtr-u.5
for
25493836
sly-u.5
for
101259425
sly-u.5
for
101259163
sot-r.1
for
102582324
sot-r.1
for
102593655
nta-r.1
for
107818975
nta-r.1
for
107802838
osa-u.5
for
4330000
zma-u.5
for
103651094
zma-u.5
for
103633683
zma-u.5
for
100281433
tae-r.2
for
123137489
tae-r.2
for
123127760
tae-r.2
for
123144843
hvu-r.1
for
123401310
sbi-r.1
for
8072479
bdi-r.1
for
100831155
cre-r.1
for
CHLRE_16g676421v5


Ortholog ID: 3989
Species ath bra bra bna bna bna ghi ghi ghi cit gma gma gma vvi ppo mtr mtr sly sly sot sot nta osa zma zma zma tae tae tae hvu sbi bdi cre
Symbol TOC1 LOC103837378 LOC103860589 LOC106382203 LOC125577741 LOC125607080 LOC107918396 LOC107886106 LOC107912322 LOC102626186 LOC100786522 LOC100813917 TOC1 LOC100258790 LOC18105787 LOC25488813 LOC25493836 LOC101259425 LOC101259163 LOC102582324 LOC102593655 LOC107802838 LOC4330000 LOC103651094 LOC103633683 LOC100281433 LOC123137489 LOC123127760 LOC123144843 LOC123401310 LOC8072479 LOC100831155 CHLRE_16g676421v5
Function* CCT motif -containing response regulator protein two-component response regulator-like APRR1 two-component response regulator-like APRR1 two-component response regulator-like APRR1 two-component response regulator-like APRR1 two-component response regulator-like APRR1 two-component response regulator-like APRR1 two-component response regulator-like APRR1 two-component response regulator-like APRR1 two-component response regulator-like APRR1 two-component response regulator-like APRR1 two-component response regulator-like APRR1 timing of CAB expression 1 two-component response regulator-like APRR1 two-component response regulator-like APRR1 two-component response regulator-like APRR1 two-component response regulator-like APRR1 two-component response regulator-like APRR1 two-component response regulator-like APRR1 two-component response regulator-like APRR1 two-component response regulator-like APRR1 two-component response regulator-like APRR1 two-component response regulator-like PRR1 two-component response regulator-like PRR1 two-component response regulator-like PRR1 uncharacterized LOC100281433 two-component response regulator-like PRR1 two-component response regulator-like PRR1 two-component response regulator-like PRR1 two-component response regulator-like PRR1 two-component response regulator-like PRR1 two-component response regulator-like PRR1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04712 Circadian rhythm - plant 2
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 9
gma00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 4
ppo00562 Inositol phosphate metabolism 2
ppo04070 Phosphatidylinositol signaling system 2
ppo04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 6
sot04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 6
zma04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 8
zma04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836259 103837378 103860589 106382203 125577741 125607080 107918396 107886106 107912322 102626186 100786522 100813917 100271889 100258790 18105787 25488813 25493836 101259425 101259163 102582324 102593655 107802838 4330000 103651094 103633683 100281433 123137489 123127760 123144843 123401310 8072479 100831155 66056676
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