ATTED-II : GeneCoexpression result

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	LFY	floral meristem identity control protein LEAFY (LFY)
ath-u.5	LFY	floral meristem identity control protein LEAFY (LFY)
ath-r.7	LFY	floral meristem identity control protein LEAFY (LFY)
ath-e.2	LFY	floral meristem identity control protein LEAFY (LFY)
ath-m.4.bio	LFY	floral meristem identity control protein LEAFY (LFY)
ath-m.4.hor	LFY	floral meristem identity control protein LEAFY (LFY)
ath-m.4.lig	LFY	floral meristem identity control protein LEAFY (LFY)
ath-m.4.str	LFY	floral meristem identity control protein LEAFY (LFY)
ath-m.4.tis	LFY	floral meristem identity control protein LEAFY (LFY)
ghi-r.1	107955953	floricaula/leafy homolog
ghi-r.1	121219288	floricaula/leafy homolog
sly-u.5	FALSIFLORA	FLORICAULA/LEAFY-like protein
sot-r.1	LFY	LEAFY/FLORICAULA
osa-u.5	4336857	probable transcription factor FL
zma-u.5	542098	zea floricaula/leafy 1
zma-u.5	103645994	probable transcription factor FL
tae-r.2	123190326	probable transcription factor FL
tae-r.2	780600	probable transcription factor FL
tae-r.2	780683	probable transcription factor FL
hvu-r.1	123427761	probable transcription factor FL
sbi-r.1	8063911	probable transcription factor FL

Annotation

functional annotation

KEGG

GO BP

GO:0010077 [list] [network] maintenance of inflorescence meristem identity	(9 genes)	IGI
GO:0010582 [list] [network] floral meristem determinacy	(20 genes)	IGI
GO:0009740 [list] [network] gibberellic acid mediated signaling pathway	(41 genes)	TAS
GO:0009908 [list] [network] flower development	(378 genes)	IMP
GO:0006355 [list] [network] regulation of DNA-templated transcription	(1618 genes)	IEA

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM TAS

GO MF

GO:0031490 [list] [network] chromatin DNA binding	(22 genes)	IDA
GO:0042803 [list] [network] protein homodimerization activity	(237 genes)	IDA
GO:0000976 [list] [network] transcription cis-regulatory region binding	(716 genes)	IPI
GO:0043565 [list] [network] sequence-specific DNA binding	(875 genes)	IDA
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1620 genes)	IDA TAS
GO:0005515 [list] [network] protein binding	(5363 genes)	IPI

Protein

NP_001331273.1 [sequence] [blastp]
NP_200993.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, mito 4, cyto 1, plas 1, cyto_plas 1	(predict for NP_001331273.1)
nucl 6, mito 3, cysk_nucl 3	(predict for NP_200993.1)

Subcellular
localization
TargetP

mito 4, other 4	(predict for NP_001331273.1)
mito 4, other 4	(predict for NP_200993.1)

Gene expression

All samples

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for LFY	ath-u.5 for LFY	ath-r.7 for LFY	ath-e.2 for LFY	ath-m.4.bio for LFY	ath-m.4.hor for LFY	ath-m.4.lig for LFY	ath-m.4.str for LFY	ath-m.4.tis for LFY	ghi-r.1 for 107955953	ghi-r.1 for 121219288	sly-u.5 for FALSIFLORA	sot-r.1 for LFY	osa-u.5 for 4336857	zma-u.5 for 542098	zma-u.5 for 103645994	tae-r.2 for 123190326	tae-r.2 for 780600	tae-r.2 for 780683	hvu-r.1 for 123427761	sbi-r.1 for 8063911