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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   XND1   xylem NAC domain 1 
 ath-u.5   XND1   xylem NAC domain 1 
 ath-r.7   XND1   xylem NAC domain 1 
 ath-e.2   XND1   xylem NAC domain 1 
 ath-m.4.bio   XND1   xylem NAC domain 1 
 ath-m.4.hor   XND1   xylem NAC domain 1 
 ath-m.4.lig   XND1   xylem NAC domain 1 
 ath-m.4.str   XND1   xylem NAC domain 1 
 ath-m.4.tis   XND1   xylem NAC domain 1 
 bra-r.6   103837531   NAC domain-containing protein 104 
 bra-r.6   103855245   NAC domain-containing protein 104 
 bra-r.6   103873877   NAC domain-containing protein 104 
 bna-r.1   106425832   NAC domain-containing protein 104-like 
 bna-r.1   125588827   NAC domain-containing protein 104-like 
 bna-r.1   106377242   NAC domain-containing protein 104 
 ghi-r.1   107929554   NAC domain-containing protein 104 
 ghi-r.1   107929215   NAC domain-containing protein 104 
 cit-r.1   102628071   NAC domain-containing protein 104-like 
 gma-u.5   100793989   NAC domain-containing protein 104 
 vvi-u.5   100267164   NAC domain-containing protein 104 
 mtr-u.5   25493296   NAC domain-containing protein 104 
 sly-u.5   101246188   NAC domain-containing protein 104 
 sot-r.1   102590664   NAC transcription factor 25 
 nta-r.1   107782605   NAC domain-containing protein 104 
 nta-r.1   107761367   NAC domain-containing protein 104 
 osa-u.5   4329655   NAC domain-containing protein 104 
 zma-u.5   100382216   uncharacterized LOC100382216 
 zma-u.5   100284512   NAC domain-containing protein 78 
 tae-r.2   123053362   NAC domain-containing protein 104 
 sbi-r.1   110436208   NAC domain-containing protein 104-like 

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Top 50 coexpressed genes to XND1 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to XND1 (ath-m.9 coexpression data)

CoexMap"836574"


athXND1 | Entrez gene ID : 836574      
Species ath bra bna ghi cit gma vvi mtr sly sot nta osa zma tae sbi ppo bdi cre hvu
Paralog 9 3 3 2 1 1 1 1 1 1 2 1 2 1 1 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010089 [list] [network] xylem development  (46 genes)  IMP  
GO:0043067 [list] [network] regulation of programmed cell death  (84 genes)  IMP  
GO:0048367 [list] [network] shoot system development  (800 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0003677 [list] [network] DNA binding  (1274 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS  
Protein NP_001332105.1 [sequence] [blastp]
NP_201258.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cyto 1,  mito 1,  extr 1  (predict for NP_001332105.1)
nucl 5,  cyto 4,  extr 1  (predict for NP_201258.2)
Subcellular
localization
TargetP
other 7  (predict for NP_001332105.1)
other 7  (predict for NP_201258.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
XND1
ath-u.5
for
XND1
ath-r.7
for
XND1
ath-e.2
for
XND1
ath-m.4.bio
for
XND1
ath-m.4.hor
for
XND1
ath-m.4.lig
for
XND1
ath-m.4.str
for
XND1
ath-m.4.tis
for
XND1
bra-r.6
for
103837531
bra-r.6
for
103855245
bra-r.6
for
103873877
bna-r.1
for
106425832
bna-r.1
for
125588827
bna-r.1
for
106377242
ghi-r.1
for
107929554
ghi-r.1
for
107929215
cit-r.1
for
102628071
gma-u.5
for
100793989
vvi-u.5
for
100267164
mtr-u.5
for
25493296
sly-u.5
for
101246188
sot-r.1
for
102590664
nta-r.1
for
107782605
nta-r.1
for
107761367
osa-u.5
for
4329655
zma-u.5
for
100382216
zma-u.5
for
100284512
tae-r.2
for
123053362
sbi-r.1
for
110436208


Ortholog ID: 3387
Species ath bra bra bra bna bna bna ghi ghi ghi cit gma vvi ppo mtr sly sot nta osa zma zma tae sbi
Symbol XND1 LOC103837531 LOC103855245 LOC103873877 LOC106377242 LOC106366248 LOC106351914 LOC107929215 LOC121214813 LOC121221133 LOC102628071 LOC100793989 LOC100267164 LOC7479142 LOC25493296 LOC101246188 LOC102590664 LOC107782605 LOC4329655 LOC100382216 LOC100284512 LOC123053362 LOC110436208
Function* xylem NAC domain 1 NAC domain-containing protein 104 NAC domain-containing protein 104 NAC domain-containing protein 104 NAC domain-containing protein 104 NAC domain-containing protein 104 NAC domain-containing protein 104 NAC domain-containing protein 104 NAC domain-containing protein 104 NAC domain-containing protein 104 NAC domain-containing protein 104-like NAC domain-containing protein 104 NAC domain-containing protein 104 NAC domain-containing protein 104 NAC domain-containing protein 104 NAC domain-containing protein 104 NAC transcription factor 25 NAC domain-containing protein 104 NAC domain-containing protein 104 uncharacterized LOC100382216 NAC domain-containing protein 78 NAC domain-containing protein 104 NAC domain-containing protein 104-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00350 Tyrosine metabolism 2
ath00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00330 Arginine and proline metabolism 3
vvi00010 Glycolysis / Gluconeogenesis 2
vvi00350 Tyrosine metabolism 2
vvi00860 Porphyrin metabolism 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00740 Riboflavin metabolism 3
mtr04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00270 Cysteine and methionine metabolism 2
sot00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00460 Cyanoamino acid metabolism 4
tae00500 Starch and sucrose metabolism 4
tae00999 Biosynthesis of various plant secondary metabolites 4
tae00010 Glycolysis / Gluconeogenesis 2
tae00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00500 Starch and sucrose metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836574 103837531 103855245 103873877 106377242 106366248 106351914 107929215 121214813 121221133 102628071 100793989 100267164 7479142 25493296 101246188 102590664 107782605 4329655 100382216 100284512 123053362 110436208
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