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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   FNR1   ferredoxin-NADP[+]-oxidoreductase 1 
 ath-u.5   FNR1   ferredoxin-NADP[+]-oxidoreductase 1 
 ath-r.7   FNR1   ferredoxin-NADP[+]-oxidoreductase 1 
 ath-e.2   FNR1   ferredoxin-NADP[+]-oxidoreductase 1 
 ath-m.4.bio   FNR1   ferredoxin-NADP[+]-oxidoreductase 1 
 ath-m.4.hor   FNR1   ferredoxin-NADP[+]-oxidoreductase 1 
 ath-m.4.lig   FNR1   ferredoxin-NADP[+]-oxidoreductase 1 
 ath-m.4.str   FNR1   ferredoxin-NADP[+]-oxidoreductase 1 
 ath-m.4.tis   FNR1   ferredoxin-NADP[+]-oxidoreductase 1 
 ath-u.5   FNR2   ferredoxin-NADP[+]-oxidoreductase 2 
 gma-u.5   100793840   ferredoxin--NADP reductase, leaf isozyme, chloroplastic 
 gma-u.5   100798467   ferredoxin--NADP reductase, leaf isozyme, chloroplastic 
 gma-u.5   100802032   ferredoxin--NADP reductase, leaf isozyme, chloroplastic 
 vvi-u.5   100252241   ferredoxin--NADP reductase, leaf-type isozyme, chloroplastic 
 vvi-u.5   100241976   ferredoxin--NADP reductase, leaf-type isozyme, chloroplastic 
 ppo-u.5   18099184   ferredoxin--NADP reductase, leaf isozyme, chloroplastic 
 ppo-u.5   18101088   ferredoxin--NADP reductase, leaf isozyme, chloroplastic 
 mtr-u.5   11418744   ferredoxin--NADP reductase, leaf isozyme, chloroplastic 
 sly-u.5   101251845   ferredoxin--NADP reductase, leaf-type isozyme, chloroplastic-like 
 sly-u.5   101261284   ferredoxin--NADP reductase, leaf-type isozyme, chloroplastic 
 osa-u.5   4328000   ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic-like 
 osa-u.5   LFNR1   ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic-like 
 zma-u.5   541626   ferredoxin 
 zma-u.5   100282643   ferredoxin--NADP reductase, leaf isozyme 
 zma-u.5   542558   ferredoxin 

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Top 50 coexpressed genes to FNR1 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to FNR1 (ath-m.9 coexpression data)

CoexMap"836751"


athFNR1 | Entrez gene ID : 836751      
Species ath gma vvi ppo mtr sly osa zma hvu bna cit bra ghi sbi bdi nta tae cre sot
Paralog 10 3 2 2 1 2 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00195 [list] [network] Photosynthesis (77 genes)
GO BP
GO:1901463 [list] [network] regulation of tetrapyrrole biosynthetic process  (28 genes)  IMP  
GO:0009767 [list] [network] photosynthetic electron transport chain  (35 genes)  IMP  
GO CC
GO:0098807 [list] [network] chloroplast thylakoid membrane protein complex  (19 genes)  ISS  
GO:0031977 [list] [network] thylakoid lumen  (69 genes)  HDA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (314 genes)  HDA IDA  
GO:0048046 [list] [network] apoplast  (340 genes)  HDA  
GO:0009534 [list] [network] chloroplast thylakoid  (417 genes)  HDA  
GO:0009579 [list] [network] thylakoid  (507 genes)  HDA  
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA IDA ISM  
GO:0009536 [list] [network] plastid  (5443 genes)  HDA  
GO MF
GO:0003959 [list] [network] NADPH dehydrogenase activity  (7 genes)  IDA  
GO:0008266 [list] [network] poly(U) RNA binding  (19 genes)  IDA  
GO:0009055 [list] [network] electron transfer activity  (81 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001078805.1 [sequence] [blastp]
NP_201420.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  cyto 1,  mito 1  (predict for NP_001078805.1)
chlo 6,  chlo_mito 4,  vacu 1,  mito 1  (predict for NP_201420.1)
Subcellular
localization
TargetP
mito 5,  other 5  (predict for NP_001078805.1)
chlo 8  (predict for NP_201420.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
FNR1
ath-u.5
for
FNR1
ath-r.7
for
FNR1
ath-e.2
for
FNR1
ath-m.4.bio
for
FNR1
ath-m.4.hor
for
FNR1
ath-m.4.lig
for
FNR1
ath-m.4.str
for
FNR1
ath-m.4.tis
for
FNR1
ath-u.5
for
FNR2
gma-u.5
for
100793840
gma-u.5
for
100798467
gma-u.5
for
100802032
vvi-u.5
for
100252241
vvi-u.5
for
100241976
ppo-u.5
for
18099184
ppo-u.5
for
18101088
mtr-u.5
for
11418744
sly-u.5
for
101251845
sly-u.5
for
101261284
osa-u.5
for
4328000
osa-u.5
for
LFNR1
zma-u.5
for
541626
zma-u.5
for
100282643
zma-u.5
for
542558


Ortholog ID: 3508
Species ath ath bra bna bna ghi ghi cit gma gma vvi vvi ppo ppo mtr sly sly sot sot nta nta osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi
Symbol FNR1 FNR2 LOC103835814 LOC106410536 LOC106440749 LOC107895874 LOC107945802 LOC102621724 LOC100798467 LOC100802032 LOC100241976 LOC100252241 LOC18101088 LOC18099184 LOC11418744 LOC101251845 LOC101261284 LOC102591399 LOC102583485 LOC107760150 LOC107772606 LOC4328000 LFNR1 LOC100282643 LOC542558 LOC123148043 LOC123142939 LOC123410596 LOC123403451 LOC8067895 LOC8077380 LOC100844703 LOC100824314
Function* ferredoxin-NADP[+]-oxidoreductase 1 ferredoxin-NADP[+]-oxidoreductase 2 ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic-like ferredoxin--NADP reductase, leaf isozyme, chloroplastic ferredoxin--NADP reductase, leaf isozyme, chloroplastic ferredoxin--NADP reductase, leaf-type isozyme, chloroplastic ferredoxin--NADP reductase, leaf isozyme, chloroplastic ferredoxin--NADP reductase, leaf isozyme, chloroplastic ferredoxin--NADP reductase, leaf-type isozyme, chloroplastic ferredoxin--NADP reductase, leaf-type isozyme, chloroplastic ferredoxin--NADP reductase, leaf isozyme, chloroplastic ferredoxin--NADP reductase, leaf isozyme, chloroplastic ferredoxin--NADP reductase, leaf isozyme, chloroplastic ferredoxin--NADP reductase, leaf-type isozyme, chloroplastic-like ferredoxin--NADP reductase, leaf-type isozyme, chloroplastic ferredoxin--NADP reductase, leaf-type isozyme, chloroplastic ferredoxin--NADP reductase, leaf-type isozyme, chloroplastic-like ferredoxin--NADP reductase, leaf-type isozyme, chloroplastic ferredoxin--NADP reductase, leaf-type isozyme, chloroplastic-like ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic-like ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic-like ferredoxin--NADP reductase, leaf isozyme ferredoxin ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic-like ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic-like ferredoxin--NADP reductase, leaf isozyme, chloroplastic ferredoxin--NADP reductase, leaf isozyme, chloroplastic ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 9
ath00710 Carbon fixation by Calvin cycle 8
ath00195 Photosynthesis 6
ath00010 Glycolysis / Gluconeogenesis 3
ath00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 3
ath00260 Glycine, serine and threonine metabolism 2
ath00630 Glyoxylate and dicarboxylate metabolism 2
ath00670 One carbon pool by folate 2
ath00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 5
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 10
cit00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00710 Carbon fixation by Calvin cycle 6
gma01200 Carbon metabolism 6
gma00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 9
gma04820 Cytoskeleton in muscle cells 2
gma00710 Carbon fixation by Calvin cycle 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 4
vvi01200 Carbon metabolism 3
vvi00630 Glyoxylate and dicarboxylate metabolism 2
vvi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 7
vvi01200 Carbon metabolism 5
vvi00710 Carbon fixation by Calvin cycle 3
vvi00630 Glyoxylate and dicarboxylate metabolism 3
vvi00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 8
ppo00710 Carbon fixation by Calvin cycle 4
ppo01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 11
ppo00710 Carbon fixation by Calvin cycle 2
ppo01200 Carbon metabolism 2
ppo00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 6
mtr00710 Carbon fixation by Calvin cycle 5
mtr00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 5
sly00710 Carbon fixation by Calvin cycle 3
sly00260 Glycine, serine and threonine metabolism 2
sly00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 5
sly01200 Carbon metabolism 4
sly00630 Glyoxylate and dicarboxylate metabolism 2
sly00190 Oxidative phosphorylation 2
sly00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 5
sot01200 Carbon metabolism 5
sot00710 Carbon fixation by Calvin cycle 3
sot00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 6
sot01200 Carbon metabolism 6
sot00710 Carbon fixation by Calvin cycle 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 5
nta00010 Glycolysis / Gluconeogenesis 2
nta00030 Pentose phosphate pathway 2
nta00051 Fructose and mannose metabolism 2
nta00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 4
nta00010 Glycolysis / Gluconeogenesis 2
nta00030 Pentose phosphate pathway 2
nta00051 Fructose and mannose metabolism 2
nta00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 7
osa00710 Carbon fixation by Calvin cycle 5
osa00195 Photosynthesis 4
osa00630 Glyoxylate and dicarboxylate metabolism 3
osa00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 5
osa00710 Carbon fixation by Calvin cycle 4
osa00195 Photosynthesis 4
osa00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 6
zma00710 Carbon fixation by Calvin cycle 3
zma01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 7
zma00710 Carbon fixation by Calvin cycle 3
zma01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01200 Carbon metabolism 6
tae00710 Carbon fixation by Calvin cycle 5
tae00195 Photosynthesis 3
tae00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01200 Carbon metabolism 6
tae00195 Photosynthesis 5
tae00710 Carbon fixation by Calvin cycle 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 7
hvu00195 Photosynthesis 4
hvu00710 Carbon fixation by Calvin cycle 4
hvu00630 Glyoxylate and dicarboxylate metabolism 3
hvu00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 8
hvu00195 Photosynthesis 5
hvu00710 Carbon fixation by Calvin cycle 5
hvu00630 Glyoxylate and dicarboxylate metabolism 5
hvu00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
sbi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00195 Photosynthesis 2
sbi03010 Ribosome 2
sbi00010 Glycolysis / Gluconeogenesis 2
sbi00030 Pentose phosphate pathway 2
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 5
bdi00195 Photosynthesis 4
bdi00710 Carbon fixation by Calvin cycle 3
bdi00010 Glycolysis / Gluconeogenesis 2
bdi00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 8
bdi00630 Glyoxylate and dicarboxylate metabolism 5
bdi00195 Photosynthesis 4
bdi00710 Carbon fixation by Calvin cycle 4
bdi04146 Peroxisome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836751 838591 103835814 106410536 106440749 107895874 107945802 102621724 100798467 100802032 100241976 100252241 18101088 18099184 11418744 101251845 101261284 102591399 102583485 107760150 107772606 4328000 4339874 100282643 542558 123148043 123142939 123410596 123403451 8067895 8077380 100844703 100824314
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