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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   AT1G09060   JmjC domain protein JMJ24 
 ath-u.5   AT1G09060   JmjC domain protein JMJ24 
 ath-r.7   AT1G09060   JmjC domain protein JMJ24 
 ath-e.2   AT1G09060   JmjC domain protein JMJ24 
 ath-m.4.bio   AT1G09060   JmjC domain protein JMJ24 
 ath-m.4.hor   AT1G09060   JmjC domain protein JMJ24 
 ath-m.4.lig   AT1G09060   JmjC domain protein JMJ24 
 ath-m.4.str   AT1G09060   JmjC domain protein JMJ24 
 ath-m.4.tis   AT1G09060   JmjC domain protein JMJ24 
 bra-r.6   103836361   lysine-specific demethylase JMJ25 
 bna-r.1   106362338   lysine-specific demethylase JMJ25-like 
 bna-r.1   106453173   lysine-specific demethylase JMJ25 
 ghi-r.1   107899094   lysine-specific demethylase JMJ25 
 ghi-r.1   107894236   lysine-specific demethylase JMJ25 
 cit-r.1   102630420   E3 ubiquitin-protein ligase JMJ24 
 gma-u.5   100792166   lysine-specific demethylase JMJ25 
 gma-u.5   100801287   lysine-specific demethylase JMJ25 
 vvi-u.5   100249389   E3 ubiquitin-protein ligase JMJ24 
 ppo-u.5   18098686   E3 ubiquitin-protein ligase JMJ24 
 ppo-u.5   7473273   E3 ubiquitin-protein ligase JMJ24 
 mtr-u.5   11405620   lysine-specific demethylase JMJ25 
 sly-u.5   101261570   E3 ubiquitin-protein ligase JMJ24 
 sot-r.1   102579305   lysine-specific demethylase JMJ25 
 nta-r.1   107762636   E3 ubiquitin-protein ligase JMJ24 
 nta-r.1   107826305   E3 ubiquitin-protein ligase JMJ24 
 osa-u.5   4332818   E3 ubiquitin-protein ligase JMJ24 
 zma-u.5   103639146   lysine-specific demethylase JMJ25-like 
 tae-r.2   123097453   lysine-specific demethylase JMJ25 
 tae-r.2   123085844   lysine-specific demethylase JMJ25 
 hvu-r.1   123448633   lysine-specific demethylase JMJ25-like 
 sbi-r.1   8082299   lysine-specific demethylase JMJ25 
 bdi-r.1   100839939   lysine-specific demethylase JMJ25 

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Top 50 coexpressed genes to AT1G09060 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G09060 (ath-m.9 coexpression data)

CoexMap"837427"


athAT1G09060 | Entrez gene ID : 837427      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 1 2 1 1 1 2 1 1 2 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0090310 [list] [network] negative regulation of DNA methylation-dependent heterochromatin formation  (2 genes)  IMP  
GO:0070920 [list] [network] regulation of regulatory ncRNA processing  (4 genes)  IMP  
GO:0043161 [list] [network] proteasome-mediated ubiquitin-dependent protein catabolic process  (33 genes)  IDA  
GO:0010628 [list] [network] positive regulation of gene expression  (71 genes)  IMP  
GO:0031507 [list] [network] heterochromatin formation  (74 genes)  IMP  
GO:0016567 [list] [network] protein ubiquitination  (170 genes)  IDA  
GO:0040029 [list] [network] epigenetic regulation of gene expression  (174 genes)  IGI IMP  
GO CC
GO:0048188 [list] [network] Set1C/COMPASS complex  (12 genes)  IDA  
GO:0031011 [list] [network] Ino80 complex  (16 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0031624 [list] [network] ubiquitin conjugating enzyme binding  (2 genes)  IPI  
GO:0032451 [list] [network] demethylase activity  (37 genes)  IDA  
GO:0042393 [list] [network] histone binding  (50 genes)  IDA  
GO:0061630 [list] [network] ubiquitin protein ligase activity  (83 genes)  IDA  
GO:0005506 [list] [network] iron ion binding  (107 genes)  IDA  
GO:0042803 [list] [network] protein homodimerization activity  (237 genes)  IDA  
GO:0000976 [list] [network] transcription cis-regulatory region binding  (716 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001031007.1 [sequence] [blastp]
NP_001318961.1 [sequence] [blastp]
NP_172380.2 [sequence] [blastp]
NP_973798.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for NP_001031007.1)
nucl 9  (predict for NP_001318961.1)
nucl 9  (predict for NP_172380.2)
nucl 9  (predict for NP_973798.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001031007.1)
other 9  (predict for NP_001318961.1)
other 7,  chlo 4  (predict for NP_172380.2)
other 7,  chlo 4  (predict for NP_973798.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
AT1G09060
ath-u.5
for
AT1G09060
ath-r.7
for
AT1G09060
ath-e.2
for
AT1G09060
ath-m.4.bio
for
AT1G09060
ath-m.4.hor
for
AT1G09060
ath-m.4.lig
for
AT1G09060
ath-m.4.str
for
AT1G09060
ath-m.4.tis
for
AT1G09060
bra-r.6
for
103836361
bna-r.1
for
106362338
bna-r.1
for
106453173
ghi-r.1
for
107899094
ghi-r.1
for
107894236
cit-r.1
for
102630420
gma-u.5
for
100792166
gma-u.5
for
100801287
vvi-u.5
for
100249389
ppo-u.5
for
18098686
ppo-u.5
for
7473273
mtr-u.5
for
11405620
sly-u.5
for
101261570
sot-r.1
for
102579305
nta-r.1
for
107762636
nta-r.1
for
107826305
osa-u.5
for
4332818
zma-u.5
for
103639146
tae-r.2
for
123097453
tae-r.2
for
123085844
hvu-r.1
for
123448633
sbi-r.1
for
8082299
bdi-r.1
for
100839939


Ortholog ID: 11038
Species ath bra bna bna ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma tae tae hvu sbi bdi
Symbol AT1G09060 LOC103836361 LOC106362338 LOC106453173 LOC107899094 LOC107894236 LOC102630420 LOC100792166 LOC100801287 LOC100249389 LOC18098686 LOC7473273 LOC11405620 LOC101261570 LOC102579305 LOC107762636 LOC107826305 LOC4332818 LOC103639146 LOC123097453 LOC123085844 LOC123448633 LOC8082299 LOC100839939
Function* JmjC domain protein JMJ24 lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25-like lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25 E3 ubiquitin-protein ligase JMJ24 lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25 E3 ubiquitin-protein ligase JMJ24 E3 ubiquitin-protein ligase JMJ24 E3 ubiquitin-protein ligase JMJ24 lysine-specific demethylase JMJ25 E3 ubiquitin-protein ligase JMJ24 lysine-specific demethylase JMJ25 E3 ubiquitin-protein ligase JMJ24 E3 ubiquitin-protein ligase JMJ24 E3 ubiquitin-protein ligase JMJ24 lysine-specific demethylase JMJ25-like lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25-like lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
ath00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 3
bna04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00564 Glycerophospholipid metabolism 2
gma00565 Ether lipid metabolism 2
gma04144 Endocytosis 2
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
ppo03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 2
sly04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04626 Plant-pathogen interaction 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04136 Autophagy - other 3
tae04518 Integrin signaling 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837427 103836361 106362338 106453173 107899094 107894236 102630420 100792166 100801287 100249389 18098686 7473273 11405620 101261570 102579305 107762636 107826305 4332818 103639146 123097453 123085844 123448633 8082299 100839939
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