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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   AT1G09730   Cysteine proteinases superfamily protein 
 ath-u.5   AT1G09730   Cysteine proteinases superfamily protein 
 ath-r.7   AT1G09730   Cysteine proteinases superfamily protein 
 ath-e.2   AT1G09730   Cysteine proteinases superfamily protein 
 ath-m.4.bio   AT1G09730   Cysteine proteinases superfamily protein 
 ath-m.4.hor   AT1G09730   Cysteine proteinases superfamily protein 
 ath-m.4.lig   AT1G09730   Cysteine proteinases superfamily protein 
 ath-m.4.str   AT1G09730   Cysteine proteinases superfamily protein 
 ath-m.4.tis   AT1G09730   Cysteine proteinases superfamily protein 
 ath-u.5   AT4G33620   Cysteine proteinases superfamily protein 
 bra-r.6   103871747   probable ubiquitin-like-specific protease 2B 
 bra-r.6   103836316   probable ubiquitin-like-specific protease 2B 
 bra-r.6   103845672   probable ubiquitin-like-specific protease 2A 
 bna-r.1   106453138   probable ubiquitin-like-specific protease 2B 
 bna-r.1   106438543   probable ubiquitin-like-specific protease 2A 
 bna-r.1   106346252   probable ubiquitin-like-specific protease 2B 
 ghi-r.1   107922179   probable ubiquitin-like-specific protease 2B 
 ghi-r.1   107887005   probable ubiquitin-like-specific protease 2B 
 ghi-r.1   107917777   probable ubiquitin-like-specific protease 2B 
 cit-r.1   102620988   probable ubiquitin-like-specific protease 2B 
 cit-r.1   102624819   probable ubiquitin-like-specific protease 2A 
 gma-u.5   100809894   probable ubiquitin-like-specific protease 2A 
 gma-u.5   100790302   probable ubiquitin-like-specific protease 2A 
 vvi-u.5   104882498   probable ubiquitin-like-specific protease 2B 
 ppo-u.5   7467199   probable ubiquitin-like-specific protease 2B 
 ppo-u.5   7468856   probable ubiquitin-like-specific protease 2B 
 ppo-u.5   7485033   probable ubiquitin-like-specific protease 2B 
 mtr-u.5   11420879   probable ubiquitin-like-specific protease 2B 
 mtr-u.5   11424218   probable ubiquitin-like-specific protease 2A 
 sly-u.5   101267564   probable ubiquitin-like-specific protease 2B 
 sly-u.5   101262374   probable ubiquitin-like-specific protease 2B 
 sot-r.1   102581098   probable ubiquitin-like-specific protease 2B 
 sot-r.1   102592242   probable ubiquitin-like-specific protease 2A 
 nta-r.1   107785946   putative ubiquitin-like-specific protease 2B 
 nta-r.1   107786561   putative ubiquitin-like-specific protease 2B 
 nta-r.1   107787832   putative ubiquitin-like-specific protease 2B 
 osa-u.5   4338081   probable ubiquitin-like-specific protease 2B 
 zma-u.5   100278181   uncharacterized LOC100278181 
 tae-r.2   123123649   probable ubiquitin-like-specific protease 2B 
 tae-r.2   123087774   uncharacterized LOC123087774 
 tae-r.2   123114153   probable ubiquitin-like-specific protease 2B 
 hvu-r.1   123394927   uncharacterized LOC123394927 
 sbi-r.1   8058927   probable ubiquitin-like-specific protease 2B 
 bdi-r.1   100829908   probable ubiquitin-like-specific protease 2A 
 cre-r.1   CHLRE_06g278197v5   uncharacterized protein 

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Top 50 coexpressed genes to AT1G09730 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G09730 (ath-m.9 coexpression data)

CoexMap"837501"


athAT1G09730 | Entrez gene ID : 837501      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 3 3 3 2 2 1 3 2 2 2 3 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0048576 [list] [network] positive regulation of short-day photoperiodism, flowering  (3 genes)  IMP  
GO:0016926 [list] [network] protein desumoylation  (7 genes)  ISS  
GO:0048578 [list] [network] positive regulation of long-day photoperiodism, flowering  (11 genes)  IMP  
GO:0016925 [list] [network] protein sumoylation  (14 genes)  IMP  
GO:0006508 [list] [network] proteolysis  (361 genes)  IDA IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0070139 [list] [network] SUMO-specific endopeptidase activity  (5 genes)  IDA ISS  
Protein NP_001184951.1 [sequence] [blastp]
NP_172444.3 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cyto 1  (predict for NP_001184951.1)
nucl 7,  cyto 1,  vacu 1,  cysk 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_172444.3)
Subcellular
localization
TargetP
other 6,  chlo 4  (predict for NP_001184951.1)
other 6,  chlo 4  (predict for NP_172444.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
AT1G09730
ath-u.5
for
AT1G09730
ath-r.7
for
AT1G09730
ath-e.2
for
AT1G09730
ath-m.4.bio
for
AT1G09730
ath-m.4.hor
for
AT1G09730
ath-m.4.lig
for
AT1G09730
ath-m.4.str
for
AT1G09730
ath-m.4.tis
for
AT1G09730
ath-u.5
for
AT4G33620
bra-r.6
for
103871747
bra-r.6
for
103836316
bra-r.6
for
103845672
bna-r.1
for
106453138
bna-r.1
for
106438543
bna-r.1
for
106346252
ghi-r.1
for
107922179
ghi-r.1
for
107887005
ghi-r.1
for
107917777
cit-r.1
for
102620988
cit-r.1
for
102624819
gma-u.5
for
100809894
gma-u.5
for
100790302
vvi-u.5
for
104882498
ppo-u.5
for
7467199
ppo-u.5
for
7468856
ppo-u.5
for
7485033
mtr-u.5
for
11420879
mtr-u.5
for
11424218
sly-u.5
for
101267564
sly-u.5
for
101262374
sot-r.1
for
102581098
sot-r.1
for
102592242
nta-r.1
for
107785946
nta-r.1
for
107786561
nta-r.1
for
107787832
osa-u.5
for
4338081
zma-u.5
for
100278181
tae-r.2
for
123123649
tae-r.2
for
123087774
tae-r.2
for
123114153
hvu-r.1
for
123394927
sbi-r.1
for
8058927
bdi-r.1
for
100829908
cre-r.1
for
CHLRE_06g278197v5


Ortholog ID: 3130
Species ath ath bra bra bra bna bna bna ghi ghi ghi cit cit gma gma vvi ppo ppo ppo mtr mtr sly sly sot sot nta nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol AT1G09730 AT4G33620 LOC103871747 LOC103836316 LOC103845672 LOC106438543 LOC106346252 LOC106362374 LOC107922179 LOC107908927 LOC107957823 LOC102620988 LOC102624819 LOC100790302 LOC100796777 LOC104882498 LOC7468856 LOC7485033 LOC18107031 LOC11420879 LOC11424218 LOC101267564 LOC101262374 LOC102581098 LOC102592242 LOC107785946 LOC107786561 LOC107787832 LOC4338081 LOC100278181 LOC123123649 LOC123087774 LOC123114153 LOC123394927 LOC8058927 LOC100829908 CHLRE_06g278197v5
Function* Cysteine proteinases superfamily protein Cysteine proteinases superfamily protein probable ubiquitin-like-specific protease 2B probable ubiquitin-like-specific protease 2B probable ubiquitin-like-specific protease 2A probable ubiquitin-like-specific protease 2A probable ubiquitin-like-specific protease 2B probable ubiquitin-like-specific protease 2B probable ubiquitin-like-specific protease 2B probable ubiquitin-like-specific protease 2A probable ubiquitin-like-specific protease 2B probable ubiquitin-like-specific protease 2B probable ubiquitin-like-specific protease 2A probable ubiquitin-like-specific protease 2A probable ubiquitin-like-specific protease 2B probable ubiquitin-like-specific protease 2B probable ubiquitin-like-specific protease 2B probable ubiquitin-like-specific protease 2B probable ubiquitin-like-specific protease 2B probable ubiquitin-like-specific protease 2B probable ubiquitin-like-specific protease 2A probable ubiquitin-like-specific protease 2B probable ubiquitin-like-specific protease 2B probable ubiquitin-like-specific protease 2B probable ubiquitin-like-specific protease 2A putative ubiquitin-like-specific protease 2B putative ubiquitin-like-specific protease 2B putative ubiquitin-like-specific protease 2B probable ubiquitin-like-specific protease 2B uncharacterized LOC100278181 probable ubiquitin-like-specific protease 2B uncharacterized LOC123087774 probable ubiquitin-like-specific protease 2B uncharacterized LOC123394927 probable ubiquitin-like-specific protease 2B probable ubiquitin-like-specific protease 2A uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 2
ath04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 3
bna04141 Protein processing in endoplasmic reticulum 2
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 3
bna04141 Protein processing in endoplasmic reticulum 2
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00280 Valine, leucine and isoleucine degradation 2
ghi00410 beta-Alanine metabolism 2
ghi00640 Propanoate metabolism 2
ghi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00790 Folate biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04148 Efferocytosis 2
ppo03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04136 Autophagy - other 2
ppo00790 Folate biosynthesis 2
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 3
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 2
tae03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837501 829502 103871747 103836316 103845672 106438543 106346252 106362374 107922179 107908927 107957823 102620988 102624819 100790302 100796777 104882498 7468856 7485033 18107031 11420879 11424218 101267564 101262374 102581098 102592242 107785946 107786561 107787832 4338081 100278181 123123649 123087774 123114153 123394927 8058927 100829908 5723556
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