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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   POLD4   polymerase delta 4 
 ath-u.5   POLD4   polymerase delta 4 
 ath-r.7   POLD4   polymerase delta 4 
 ath-e.2   POLD4   polymerase delta 4 
 ath-m.4.bio   POLD4   polymerase delta 4 
 ath-m.4.hor   POLD4   polymerase delta 4 
 ath-m.4.lig   POLD4   polymerase delta 4 
 ath-m.4.str   POLD4   polymerase delta 4 
 ath-m.4.tis   POLD4   polymerase delta 4 
 bra-r.6   103871760   uncharacterized LOC103871760 
 bna-r.1   106401749   uncharacterized LOC106401749 
 bna-r.1   106346242   uncharacterized LOC106346242 
 ghi-r.1   107890121   uncharacterized LOC107890121 
 ghi-r.1   107913572   uncharacterized LOC107913572 
 ghi-r.1   107937850   DNA polymerase delta subunit 4 
 cit-r.1   102608934   uncharacterized LOC102608934 
 gma-u.5   100778329   DNA polymerase delta subunit 4 
 gma-u.5   100799459   DNA polymerase delta subunit 4 
 vvi-u.5   100263057   uncharacterized LOC100263057 
 ppo-u.5   7493896   DNA polymerase delta subunit 4 
 ppo-u.5   7491082   uncharacterized LOC7491082 
 mtr-u.5   25493349   DNA polymerase delta subunit 4 
 sly-u.5   101262116   uncharacterized LOC101262116 
 sly-u.5   101255630   uncharacterized LOC101255630 
 sot-r.1   102606360   uncharacterized LOC102606360 
 sot-r.1   102605871   DNA polymerase delta subunit 4-like 
 nta-r.1   107781395   uncharacterized LOC107781395 
 nta-r.1   107811741   uncharacterized LOC107811741 
 nta-r.1   107810329   uncharacterized LOC107810329 
 osa-u.5   4344737   uncharacterized LOC4344737 
 osa-u.5   4347604   uncharacterized LOC4347604 
 zma-u.5   100282638   polymerase delta 4 
 zma-u.5   100280534   delta DNA polymerase 
 tae-r.2   123063507   uncharacterized LOC123063507 
 tae-r.2   123140641   uncharacterized LOC123140641 
 hvu-r.1   123416082   uncharacterized LOC123416082 
 hvu-r.1   123396596   uncharacterized LOC123396596 
 sbi-r.1   8054860   DNA polymerase delta subunit 4 
 sbi-r.1   8069649   uncharacterized LOC8069649 
 bdi-r.1   100827592   DNA polymerase delta subunit 4 
 bdi-r.1   100836085   uncharacterized LOC100836085 
 cre-r.1   CHLRE_06g292950v5   uncharacterized protein 

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Top 50 coexpressed genes to POLD4 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to POLD4 (ath-m.9 coexpression data)

CoexMap"837513"


athPOLD4 | Entrez gene ID : 837513      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 3 1 2 1 2 1 2 2 3 2 2 2 2 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03030 [list] [network] DNA replication (43 genes)
ath03410 [list] [network] Base excision repair (50 genes)
ath03420 [list] [network] Nucleotide excision repair (85 genes)
ath03430 [list] [network] Mismatch repair (32 genes)
ath03440 [list] [network] Homologous recombination (60 genes)
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_563854.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  nucl 4,  cyto_nucl 3,  chlo_mito 3  (predict for NP_563854.1)
Subcellular
localization
TargetP
other 4,  mito 3  (predict for NP_563854.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
POLD4
ath-u.5
for
POLD4
ath-r.7
for
POLD4
ath-e.2
for
POLD4
ath-m.4.bio
for
POLD4
ath-m.4.hor
for
POLD4
ath-m.4.lig
for
POLD4
ath-m.4.str
for
POLD4
ath-m.4.tis
for
POLD4
bra-r.6
for
103871760
bna-r.1
for
106401749
bna-r.1
for
106346242
ghi-r.1
for
107890121
ghi-r.1
for
107913572
ghi-r.1
for
107937850
cit-r.1
for
102608934
gma-u.5
for
100778329
gma-u.5
for
100799459
vvi-u.5
for
100263057
ppo-u.5
for
7493896
ppo-u.5
for
7491082
mtr-u.5
for
25493349
sly-u.5
for
101262116
sly-u.5
for
101255630
sot-r.1
for
102606360
sot-r.1
for
102605871
nta-r.1
for
107781395
nta-r.1
for
107811741
nta-r.1
for
107810329
osa-u.5
for
4344737
osa-u.5
for
4347604
zma-u.5
for
100282638
zma-u.5
for
100280534
tae-r.2
for
123063507
tae-r.2
for
123140641
hvu-r.1
for
123416082
hvu-r.1
for
123396596
sbi-r.1
for
8054860
sbi-r.1
for
8069649
bdi-r.1
for
100827592
bdi-r.1
for
100836085
cre-r.1
for
CHLRE_06g292950v5


Ortholog ID: 3740
Species ath bra bna bna ghi ghi ghi cit gma gma vvi ppo ppo mtr sly sly sot sot nta nta nta osa osa zma zma tae hvu hvu sbi sbi bdi bdi cre
Symbol POLD4 LOC103871760 LOC106401749 LOC106346242 LOC107913572 LOC107937850 LOC107950350 LOC102608934 LOC100778329 LOC100799459 LOC100263057 LOC7493896 LOC7491082 LOC25493349 LOC101262116 LOC101255630 LOC102606360 LOC102605871 LOC107781395 LOC107811741 LOC107810329 LOC4344737 LOC4347604 LOC100282638 LOC100280534 LOC123140641 LOC123416082 LOC123396596 LOC8054860 LOC8069649 LOC100827592 LOC100836085 CHLRE_06g292950v5
Function* polymerase delta 4 uncharacterized LOC103871760 uncharacterized LOC106401749 uncharacterized LOC106346242 uncharacterized LOC107913572 DNA polymerase delta subunit 4 uncharacterized LOC107950350 uncharacterized LOC102608934 DNA polymerase delta subunit 4 DNA polymerase delta subunit 4 uncharacterized LOC100263057 DNA polymerase delta subunit 4 uncharacterized LOC7491082 DNA polymerase delta subunit 4 uncharacterized LOC101262116 uncharacterized LOC101255630 uncharacterized LOC102606360 DNA polymerase delta subunit 4-like uncharacterized LOC107781395 uncharacterized LOC107811741 uncharacterized LOC107810329 uncharacterized LOC4344737 uncharacterized LOC4347604 polymerase delta 4 delta DNA polymerase uncharacterized LOC123140641 uncharacterized LOC123416082 uncharacterized LOC123396596 DNA polymerase delta subunit 4 uncharacterized LOC8069649 DNA polymerase delta subunit 4 uncharacterized LOC100836085 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 5
ath00240 Pyrimidine metabolism 2
ath01232 Nucleotide metabolism 2
ath03030 DNA replication 2
ath03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 6
bra03008 Ribosome biogenesis in eukaryotes 3
bra03013 Nucleocytoplasmic transport 3
bra03040 Spliceosome 2
bra03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 2
bna03410 Base excision repair 2
bna03420 Nucleotide excision repair 2
bna03430 Mismatch repair 2
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 4
bna03030 DNA replication 2
bna03410 Base excision repair 2
bna03420 Nucleotide excision repair 2
bna03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 3
ghi03410 Base excision repair 3
ghi03420 Nucleotide excision repair 3
ghi03430 Mismatch repair 3
ghi03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 3
ghi03410 Base excision repair 3
ghi03420 Nucleotide excision repair 3
ghi03430 Mismatch repair 3
ghi03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
cit03420 Nucleotide excision repair 2
cit03018 RNA degradation 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 6
gma03082 ATP-dependent chromatin remodeling 2
gma03030 DNA replication 2
gma03410 Base excision repair 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 3
gma03010 Ribosome 3
gma03030 DNA replication 2
gma03410 Base excision repair 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03010 Ribosome 3
vvi03013 Nucleocytoplasmic transport 2
vvi03015 mRNA surveillance pathway 2
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 7
ppo03030 DNA replication 2
ppo03410 Base excision repair 2
ppo03420 Nucleotide excision repair 2
ppo03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00190 Oxidative phosphorylation 4
sly04120 Ubiquitin mediated proteolysis 2
sly03040 Spliceosome 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 7
sot03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03410 Base excision repair 3
sot00230 Purine metabolism 2
sot00240 Pyrimidine metabolism 2
sot00480 Glutathione metabolism 2
sot01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03420 Nucleotide excision repair 4
nta03060 Protein export 2
nta04120 Ubiquitin mediated proteolysis 2
nta04141 Protein processing in endoplasmic reticulum 2
nta03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03420 Nucleotide excision repair 4
nta04120 Ubiquitin mediated proteolysis 2
nta04141 Protein processing in endoplasmic reticulum 2
nta03060 Protein export 2
nta03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 2
osa03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 2
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 3
tae03410 Base excision repair 3
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
tae03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 2
sbi03015 mRNA surveillance pathway 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03430 Mismatch repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837513 103871760 106401749 106346242 107913572 107937850 107950350 102608934 100778329 100799459 100263057 7493896 7491082 25493349 101262116 101255630 102606360 102605871 107781395 107811741 107810329 4344737 4347604 100282638 100280534 123140641 123416082 123396596 8054860 8069649 100827592 100836085 5727144
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