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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   Pol{lambda}   DNA polymerase lambda (POLL) 
 ath-u.5   Pol{lambda}   DNA polymerase lambda (POLL) 
 ath-r.7   Pol{lambda}   DNA polymerase lambda (POLL) 
 ath-e.2   Pol{lambda}   DNA polymerase lambda (POLL) 
 ath-m.4.bio   Pol{lambda}   DNA polymerase lambda (POLL) 
 ath-m.4.hor   Pol{lambda}   DNA polymerase lambda (POLL) 
 ath-m.4.lig   Pol{lambda}   DNA polymerase lambda (POLL) 
 ath-m.4.str   Pol{lambda}   DNA polymerase lambda (POLL) 
 ath-m.4.tis   Pol{lambda}   DNA polymerase lambda (POLL) 
 bra-r.6   103868089   DNA polymerase lambda 
 bna-r.1   106453095   DNA polymerase lambda 
 ghi-r.1   107901984   DNA polymerase lambda 
 ghi-r.1   107948535   DNA polymerase lambda 
 cit-r.1   102620577   DNA polymerase lambda 
 gma-u.5   100820492   DNA polymerase lambda 
 vvi-u.5   100248348   DNA polymerase lambda 
 ppo-u.5   7459057   DNA polymerase lambda 
 mtr-u.5   25498091   DNA polymerase lambda 
 sly-u.5   101264323   DNA polymerase lambda 
 sot-r.1   102604097   DNA polymerase beta 
 nta-r.1   107817483   DNA polymerase lambda-like 
 nta-r.1   107793193   DNA polymerase lambda 
 osa-u.5   4340604   DNA polymerase lambda-like 
 zma-u.5   100383279   DNA polymerase lambda (POLL) 
 tae-r.2   123156776   DNA polymerase lambda 
 tae-r.2   123148969   DNA polymerase lambda 
 hvu-r.1   123407010   DNA polymerase lambda 
 sbi-r.1   8057897   DNA polymerase lambda 
 bdi-r.1   100827137   DNA polymerase lambda 
 cre-r.1   CHLRE_17g716101v5   uncharacterized protein 

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Top 50 coexpressed genes to Pol{lambda} (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to Pol{lambda} (ath-m.9 coexpression data)

CoexMap"837592"


athPol{lambda} | Entrez gene ID : 837592      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 1 2 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03410 [list] [network] Base excision repair (50 genes)
ath03450 [list] [network] Non-homologous end-joining (8 genes)
GO BP
GO:0006287 [list] [network] base-excision repair, gap-filling  (1 genes)  IDA  
GO:0006303 [list] [network] double-strand break repair via nonhomologous end joining  (9 genes)  IMP  
GO:0006289 [list] [network] nucleotide-excision repair  (18 genes)  IMP  
GO:0006302 [list] [network] double-strand break repair  (68 genes)  IMP  
GO:0010224 [list] [network] response to UV-B  (85 genes)  IEP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0034061 [list] [network] DNA polymerase activity  (11 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001320966.1 [sequence] [blastp]
NP_172522.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  chlo 1,  nucl 1,  extr 1,  chlo_mito 1  (predict for NP_001320966.1)
cyto 7,  chlo 1,  nucl 1,  mito 1,  extr 1,  chlo_mito 1  (predict for NP_172522.2)
Subcellular
localization
TargetP
other 5,  mito 5  (predict for NP_001320966.1)
other 5,  mito 5  (predict for NP_172522.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
Pol{lambda}
ath-u.5
for
Pol{lambda}
ath-r.7
for
Pol{lambda}
ath-e.2
for
Pol{lambda}
ath-m.4.bio
for
Pol{lambda}
ath-m.4.hor
for
Pol{lambda}
ath-m.4.lig
for
Pol{lambda}
ath-m.4.str
for
Pol{lambda}
ath-m.4.tis
for
Pol{lambda}
bra-r.6
for
103868089
bna-r.1
for
106453095
ghi-r.1
for
107901984
ghi-r.1
for
107948535
cit-r.1
for
102620577
gma-u.5
for
100820492
vvi-u.5
for
100248348
ppo-u.5
for
7459057
mtr-u.5
for
25498091
sly-u.5
for
101264323
sot-r.1
for
102604097
nta-r.1
for
107817483
nta-r.1
for
107793193
osa-u.5
for
4340604
zma-u.5
for
100383279
tae-r.2
for
123156776
tae-r.2
for
123148969
hvu-r.1
for
123407010
sbi-r.1
for
8057897
bdi-r.1
for
100827137
cre-r.1
for
CHLRE_17g716101v5


Ortholog ID: 11041
Species ath bra bna ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae hvu sbi bdi cre
Symbol Pol{lambda} LOC103868089 LOC106453095 LOC107901984 LOC107948535 LOC102620577 LOC100820492 LOC100248348 LOC7459057 LOC25498091 LOC101264323 LOC102604097 LOC107817483 LOC107793193 LOC4340604 LOC100383279 LOC123156776 LOC123148969 LOC123407010 LOC8057897 LOC100827137 CHLRE_17g716101v5
Function* DNA polymerase lambda (POLL) DNA polymerase lambda DNA polymerase lambda DNA polymerase lambda DNA polymerase lambda DNA polymerase lambda DNA polymerase lambda DNA polymerase lambda DNA polymerase lambda DNA polymerase lambda DNA polymerase lambda DNA polymerase beta DNA polymerase lambda-like DNA polymerase lambda DNA polymerase lambda-like DNA polymerase lambda (POLL) DNA polymerase lambda DNA polymerase lambda DNA polymerase lambda DNA polymerase lambda DNA polymerase lambda uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 4
ath03460 Fanconi anemia pathway 2
ath03410 Base excision repair 2
ath03430 Mismatch repair 2
ath03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00561 Glycerolipid metabolism 4
bna00564 Glycerophospholipid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00340 Histidine metabolism 3
ghi01230 Biosynthesis of amino acids 3
ghi03410 Base excision repair 2
ghi03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00340 Histidine metabolism 3
ghi01230 Biosynthesis of amino acids 3
ghi03410 Base excision repair 2
ghi03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
gma04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 3
mtr03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 2
sly03440 Homologous recombination 2
sly04141 Protein processing in endoplasmic reticulum 2
sly03410 Base excision repair 2
sly03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01240 Biosynthesis of cofactors 2
sot03410 Base excision repair 2
sot03450 Non-homologous end-joining 2
sot03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03440 Homologous recombination 2
osa03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03450 Non-homologous end-joining 5
tae03008 Ribosome biogenesis in eukaryotes 4
tae03430 Mismatch repair 4
tae03460 Fanconi anemia pathway 4
tae03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03450 Non-homologous end-joining 3
tae03008 Ribosome biogenesis in eukaryotes 3
tae03410 Base excision repair 2
tae03430 Mismatch repair 2
tae03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03410 Base excision repair 3
bdi03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837592 103868089 106453095 107901984 107948535 102620577 100820492 100248348 7459057 25498091 101264323 102604097 107817483 107793193 4340604 100383279 123156776 123148969 123407010 8057897 100827137 5725938
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