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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   D27   beta-carotene isomerase D27-like protein 
 ath-u.5   D27   beta-carotene isomerase D27-like protein 
 ath-r.7   D27   beta-carotene isomerase D27-like protein 
 ath-e.2   D27   beta-carotene isomerase D27-like protein 
 ath-m.4.bio   D27   beta-carotene isomerase D27-like protein 
 ath-m.4.hor   D27   beta-carotene isomerase D27-like protein 
 ath-m.4.lig   D27   beta-carotene isomerase D27-like protein 
 ath-m.4.str   D27   beta-carotene isomerase D27-like protein 
 ath-m.4.tis   D27   beta-carotene isomerase D27-like protein 
 bra-r.6   103843711   beta-carotene isomerase D27, chloroplastic 
 bna-r.1   106402766   beta-carotene isomerase D27, chloroplastic 
 bna-r.1   106369285   beta-carotene isomerase D27, chloroplastic 
 ghi-r.1   107941648   beta-carotene isomerase D27, chloroplastic 
 ghi-r.1   107955483   beta-carotene isomerase D27, chloroplastic 
 gma-u.5   100782912   beta-carotene isomerase D27, chloroplastic 
 vvi-u.5   100853223   beta-carotene isomerase D27, chloroplastic 
 mtr-u.5   25485781   beta-carotene isomerase D27, chloroplastic-like 
 mtr-u.5   25499185   beta-carotene isomerase D27, chloroplastic-like 
 nta-r.1   107771869   beta-carotene isomerase D27, chloroplastic 
 zma-u.5   109944624   beta-carotene isomerase D27, chloroplastic 
 zma-u.5   100277925   uncharacterized LOC100277925 

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Top 50 coexpressed genes to D27 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to D27 (ath-m.9 coexpression data)

CoexMap"838334"


athD27 | Entrez gene ID : 838334      
Species ath bra bna ghi gma vvi mtr nta zma hvu sot bdi sly osa tae ppo cre sbi cit
Paralog 9 1 2 2 1 1 2 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00906 [list] [network] Carotenoid biosynthesis (32 genes)
GO BP
GO:1901601 [list] [network] strigolactone biosynthetic process  (7 genes)  IGI  
GO:0010223 [list] [network] secondary shoot formation  (25 genes)  IMP  
GO CC
GO:0009536 [list] [network] plastid  (5443 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0106365 [list] [network] beta-carotene isomerase activity  (1 genes)  IEA  
GO:0005506 [list] [network] iron ion binding  (107 genes)  IEA  
Protein NP_563673.1 [sequence] [blastp]
NP_973748.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  chlo 2,  cyto 1,  extr 1  (predict for NP_563673.1)
chlo 5,  nucl 3,  cyto_nucl 3,  cyto 1  (predict for NP_973748.1)
Subcellular
localization
TargetP
mito 5  (predict for NP_563673.1)
mito 5  (predict for NP_973748.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
D27
ath-u.5
for
D27
ath-r.7
for
D27
ath-e.2
for
D27
ath-m.4.bio
for
D27
ath-m.4.hor
for
D27
ath-m.4.lig
for
D27
ath-m.4.str
for
D27
ath-m.4.tis
for
D27
bra-r.6
for
103843711
bna-r.1
for
106402766
bna-r.1
for
106369285
ghi-r.1
for
107941648
ghi-r.1
for
107955483
gma-u.5
for
100782912
vvi-u.5
for
100853223
mtr-u.5
for
25485781
mtr-u.5
for
25499185
nta-r.1
for
107771869
zma-u.5
for
109944624
zma-u.5
for
100277925


Ortholog ID: 7802
Species ath bra bna bna ghi ghi gma vvi mtr mtr nta zma zma
Symbol D27 LOC103843711 LOC106402766 LOC106369285 LOC107941648 LOC107955483 LOC100782912 LOC100853223 LOC25485781 LOC25499185 LOC107771869 LOC109944624 LOC100277925
Function* beta-carotene isomerase D27-like protein beta-carotene isomerase D27, chloroplastic beta-carotene isomerase D27, chloroplastic beta-carotene isomerase D27, chloroplastic beta-carotene isomerase D27, chloroplastic beta-carotene isomerase D27, chloroplastic beta-carotene isomerase D27, chloroplastic beta-carotene isomerase D27, chloroplastic beta-carotene isomerase D27, chloroplastic-like beta-carotene isomerase D27, chloroplastic-like beta-carotene isomerase D27, chloroplastic beta-carotene isomerase D27, chloroplastic uncharacterized LOC100277925
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00260 Glycine, serine and threonine metabolism 5
bna00460 Cyanoamino acid metabolism 5
bna00630 Glyoxylate and dicarboxylate metabolism 5
bna00670 One carbon pool by folate 5
bna01200 Carbon metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00260 Glycine, serine and threonine metabolism 5
bna00460 Cyanoamino acid metabolism 5
bna00630 Glyoxylate and dicarboxylate metabolism 5
bna00670 One carbon pool by folate 5
bna01200 Carbon metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00100 Steroid biosynthesis 5
ghi00906 Carotenoid biosynthesis 2
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00030 Pentose phosphate pathway 2
ghi00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
ghi00100 Steroid biosynthesis 2
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00030 Pentose phosphate pathway 2
ghi00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00906 Carotenoid biosynthesis 7
mtr00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00230 Purine metabolism 2
mtr00250 Alanine, aspartate and glutamate metabolism 2
mtr03440 Homologous recombination 2
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 4
nta00940 Phenylpropanoid biosynthesis 2
nta00941 Flavonoid biosynthesis 2
nta00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00230 Purine metabolism 2
zma00250 Alanine, aspartate and glutamate metabolism 2
zma01232 Nucleotide metabolism 2
zma01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838334 103843711 106402766 106369285 107941648 107955483 100782912 100853223 25485781 25499185 107771869 109944624 100277925
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