ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-m.9	AT1G18850	uncharacterized protein
ath-u.5	AT1G18850	uncharacterized protein
ath-r.7	AT1G18850	uncharacterized protein
ath-e.2	AT1G18850	uncharacterized protein
ath-m.4.bio	AT1G18850	uncharacterized protein
ath-m.4.hor	AT1G18850	uncharacterized protein
ath-m.4.lig	AT1G18850	uncharacterized protein
ath-m.4.str	AT1G18850	uncharacterized protein
ath-m.4.tis	AT1G18850	uncharacterized protein
bra-r.6	103872690	uncharacterized LOC103872690
bna-r.1	106346930	uncharacterized LOC106346930
bna-r.1	106419009	uncharacterized LOC106419009
ghi-r.1	121223620	uncharacterized LOC121223620
ghi-r.1	107912147	uncharacterized LOC107912147
cit-r.1	102629383	uncharacterized LOC102629383
gma-u.5	100817544	uncharacterized LOC100817544
gma-u.5	100806052	uncharacterized LOC100806052
vvi-u.5	100257068	uncharacterized LOC100257068
ppo-u.5	18105811	uncharacterized LOC18105811
mtr-u.5	11429028	uncharacterized LOC11429028
sly-u.5	101250023	uncharacterized LOC101250023
sot-r.1	102589247	uncharacterized LOC102589247
nta-r.1	107779494	uncharacterized LOC107779494
nta-r.1	107775126	uncharacterized LOC107775126
zma-u.5	100276506	uncharacterized LOC100276506
zma-u.5	100280435	uncharacterized LOC100280435
tae-r.2	123057476	uncharacterized LOC123057476
tae-r.2	123068191	uncharacterized LOC123068191
tae-r.2	123076745	uncharacterized LOC123076745
hvu-r.1	123439126	uncharacterized LOC123439126
sbi-r.1	8079071	uncharacterized LOC8079071
bdi-r.1	100842117	calphotin
bdi-r.1	100838889	uncharacterized LOC100838889

Annotation

functional annotation

KEGG

GO BP

GO:0006364 [list] [network] rRNA processing

(183 genes)

IPI

GO CC

GO:0005730 [list] [network] nucleolus	(394 genes)	HDA
GO:0005634 [list] [network] nucleus	(10367 genes)	ISM

GO MF

Protein

NP_564065.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, nucl 3, cyto_pero 3, cyto_E.R. 3, cyto_plas 3

(predict for NP_564065.1)

Subcellular
localization
TargetP

other 7

(predict for NP_564065.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for AT1G18850	ath-u.5 for AT1G18850	ath-r.7 for AT1G18850	ath-e.2 for AT1G18850	ath-m.4.bio for AT1G18850	ath-m.4.hor for AT1G18850	ath-m.4.lig for AT1G18850	ath-m.4.str for AT1G18850	ath-m.4.tis for AT1G18850	bra-r.6 for 103872690	bna-r.1 for 106346930	bna-r.1 for 106419009	ghi-r.1 for 121223620	ghi-r.1 for 107912147	cit-r.1 for 102629383	gma-u.5 for 100817544	gma-u.5 for 100806052	vvi-u.5 for 100257068	ppo-u.5 for 18105811	mtr-u.5 for 11429028	sly-u.5 for 101250023	sot-r.1 for 102589247	nta-r.1 for 107779494	nta-r.1 for 107775126	zma-u.5 for 100276506	zma-u.5 for 100280435	tae-r.2 for 123057476	tae-r.2 for 123068191	tae-r.2 for 123076745	hvu-r.1 for 123439126	sbi-r.1 for 8079071	bdi-r.1 for 100842117	bdi-r.1 for 100838889

Ortholog

Ortholog ID: 9786

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

zma

tae

hvu

sbi

bdi

Symbol

Function^*

uncharacterized protein

uncharacterized LOC103872690

uncharacterized LOC106346930

uncharacterized LOC106419009

uncharacterized LOC121223620

uncharacterized LOC107912147

uncharacterized LOC102629383

uncharacterized LOC100817544

uncharacterized LOC100806052

uncharacterized LOC100257068

uncharacterized LOC18105811

uncharacterized LOC11429028

uncharacterized LOC101250023

uncharacterized LOC102589247

uncharacterized LOC107779494

uncharacterized LOC107775126

uncharacterized LOC100276506

uncharacterized LOC100280435

uncharacterized LOC123057476

uncharacterized LOC123068191

uncharacterized LOC123076745

uncharacterized LOC123439126

uncharacterized LOC8079071

calphotin

uncharacterized LOC100838889

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	4
bna00230	Purine metabolism	2
bna01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	6
bna00230	Purine metabolism	2
bna01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	8
gma00240	Pyrimidine metabolism	2
gma01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	3
gma03013	Nucleocytoplasmic transport	2
gma03015	mRNA surveillance pathway	2
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	4
vvi01230	Biosynthesis of amino acids	2
vvi03013	Nucleocytoplasmic transport	2
vvi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	9
ppo03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	6
mtr03015	mRNA surveillance pathway	2
mtr03020	RNA polymerase	2
mtr00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	4
sly03010	Ribosome	3
sly00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00270	Cysteine and methionine metabolism	3
sot00670	One carbon pool by folate	2
sot00970	Aminoacyl-tRNA biosynthesis	2
sot03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	9
tae03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	4

Expression

Expression pattern

Entrez Gene ID^*

838466

103872690

106346930

106419009

121223620

107912147

102629383

100817544

100806052

100257068

18105811

11429028

101250023

102589247

107779494

107775126

100276506

100280435

123057476

123068191

123076745

123439126

8079071

100842117

100838889

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to AT1G18850 (ath-m.9 coexpression data)

Top 50 enrichment test to AT1G18850 (ath-m.9 coexpression data)


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	zma	tae	hvu	sbi	bdi	osa	cre
Paralog	9	1	2	2	1	2	1	1	1	1	1	2	2	3	1	1	2	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT1G18850 (ath-m.9 coexpression data)

Top 50 enrichment test to AT1G18850 (ath-m.9 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**