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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   PFT1   phytochrome and flowering time regulatory protein (PFT1) 
 ath-u.5   PFT1   phytochrome and flowering time regulatory protein (PFT1) 
 ath-r.7   PFT1   phytochrome and flowering time regulatory protein (PFT1) 
 ath-e.2   PFT1   phytochrome and flowering time regulatory protein (PFT1) 
 ath-m.4.bio   PFT1   phytochrome and flowering time regulatory protein (PFT1) 
 ath-m.4.hor   PFT1   phytochrome and flowering time regulatory protein (PFT1) 
 ath-m.4.lig   PFT1   phytochrome and flowering time regulatory protein (PFT1) 
 ath-m.4.str   PFT1   phytochrome and flowering time regulatory protein (PFT1) 
 ath-m.4.tis   PFT1   phytochrome and flowering time regulatory protein (PFT1) 
 bra-r.6   103840588   mediator of RNA polymerase II transcription subunit 25 
 bra-r.6   103835463   mediator of RNA polymerase II transcription subunit 25 
 bna-r.1   106401100   mediator of RNA polymerase II transcription subunit 25-like 
 bna-r.1   106361923   mediator of RNA polymerase II transcription subunit 25-like 
 bna-r.1   106347149   mediator of RNA polymerase II transcription subunit 25 
 ghi-r.1   107887167   mediator of RNA polymerase II transcription subunit 25 
 ghi-r.1   107919383   mediator of RNA polymerase II transcription subunit 25 
 ghi-r.1   121203454   mediator of RNA polymerase II transcription subunit 25 
 cit-r.1   102624904   mediator of RNA polymerase II transcription subunit 25 
 gma-u.5   100801664   mediator of RNA polymerase II transcription subunit 25 
 gma-u.5   100786254   mediator of RNA polymerase II transcription subunit 25 
 vvi-u.5   100259509   mediator of RNA polymerase II transcription subunit 25 
 ppo-u.5   7466913   mediator of RNA polymerase II transcription subunit 25 
 ppo-u.5   7483938   mediator of RNA polymerase II transcription subunit 25-like 
 mtr-u.5   11433176   mediator of RNA polymerase II transcription subunit 25 
 mtr-u.5   25481943   mediator of RNA polymerase II transcription subunit 25 
 sly-u.5   101258928   mediator of RNA polymerase II transcription subunit 25 
 sot-r.1   102582320   mediator of RNA polymerase II transcription subunit 25-like 
 nta-r.1   107795738   mediator of RNA polymerase II transcription subunit 25 
 nta-r.1   107826460   mediator of RNA polymerase II transcription subunit 25 
 nta-r.1   107787732   mediator of RNA polymerase II transcription subunit 25 
 osa-u.5   4346673   mediator of RNA polymerase II transcription subunit 25 
 zma-u.5   103647359   mediator of RNA polymerase II transcription subunit 25 
 tae-r.2   123121169   mediator of RNA polymerase II transcription subunit 25 
 tae-r.2   123103466   mediator of RNA polymerase II transcription subunit 25 
 tae-r.2   100682446   mediator of RNA polymerase II transcription subunit 25 
 hvu-r.1   123452291   mediator of RNA polymerase II transcription subunit 25 
 sbi-r.1   110432905   mediator of RNA polymerase II transcription subunit 25 
 bdi-r.1   100843505   mediator of RNA polymerase II transcription subunit 25 
 cre-r.1   CHLRE_17g736950v5   uncharacterized protein 

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Top 50 coexpressed genes to PFT1 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PFT1 (ath-m.9 coexpression data)

CoexMap"839141"


athPFT1 | Entrez gene ID : 839141      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 3 1 2 1 2 2 1 1 3 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1905499 [list] [network] trichome papilla formation  (3 genes)  IMP  
GO:0009585 [list] [network] red, far-red light phototransduction  (20 genes)  IMP  
GO:0010091 [list] [network] trichome branching  (31 genes)  IMP  
GO:0009911 [list] [network] positive regulation of flower development  (44 genes)  IMP  
GO:0010218 [list] [network] response to far red light  (57 genes)  IMP  
GO:0010114 [list] [network] response to red light  (73 genes)  IMP  
GO:0009867 [list] [network] jasmonic acid mediated signaling pathway  (74 genes)  IMP  
GO:0031349 [list] [network] positive regulation of defense response  (125 genes)  IMP  
GO:0009909 [list] [network] regulation of flower development  (163 genes)  IMP  
GO:0045893 [list] [network] positive regulation of DNA-templated transcription  (262 genes)  IMP  
GO:0050832 [list] [network] defense response to fungus  (282 genes)  IMP  
GO CC
GO:0016592 [list] [network] mediator complex  (45 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0003713 [list] [network] transcription coactivator activity  (19 genes)  NAS  
GO:0003677 [list] [network] DNA binding  (1274 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001077596.1 [sequence] [blastp]
NP_173925.3 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 4  (predict for NP_001077596.1)
nucl 9,  cyto 1  (predict for NP_173925.3)
Subcellular
localization
TargetP
chlo 3,  other 3  (predict for NP_001077596.1)
other 5,  scret 4  (predict for NP_173925.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
PFT1
ath-u.5
for
PFT1
ath-r.7
for
PFT1
ath-e.2
for
PFT1
ath-m.4.bio
for
PFT1
ath-m.4.hor
for
PFT1
ath-m.4.lig
for
PFT1
ath-m.4.str
for
PFT1
ath-m.4.tis
for
PFT1
bra-r.6
for
103840588
bra-r.6
for
103835463
bna-r.1
for
106401100
bna-r.1
for
106361923
bna-r.1
for
106347149
ghi-r.1
for
107887167
ghi-r.1
for
107919383
ghi-r.1
for
121203454
cit-r.1
for
102624904
gma-u.5
for
100801664
gma-u.5
for
100786254
vvi-u.5
for
100259509
ppo-u.5
for
7466913
ppo-u.5
for
7483938
mtr-u.5
for
11433176
mtr-u.5
for
25481943
sly-u.5
for
101258928
sot-r.1
for
102582320
nta-r.1
for
107795738
nta-r.1
for
107826460
nta-r.1
for
107787732
osa-u.5
for
4346673
zma-u.5
for
103647359
tae-r.2
for
123121169
tae-r.2
for
123103466
tae-r.2
for
100682446
hvu-r.1
for
123452291
sbi-r.1
for
110432905
bdi-r.1
for
100843505
cre-r.1
for
CHLRE_17g736950v5


Ortholog ID: 5894
Species ath bra bra bna bna bna ghi ghi ghi cit gma gma vvi ppo ppo mtr mtr mtr sly sot nta nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol PFT1 LOC103840588 LOC103835463 LOC106401100 LOC106361923 LOC106361861 LOC107887167 LOC107919383 LOC121203454 LOC102624904 LOC100801664 LOC100786254 LOC100259509 LOC7466913 LOC7483938 LOC11433176 LOC25481943 LOC25494748 LOC101258928 LOC102582320 LOC107795738 LOC107826460 LOC107786082 LOC4346673 LOC103647359 LOC123121169 LOC123103466 LOC100682446 LOC123452291 LOC110432905 LOC100843505 CHLRE_17g736950v5
Function* phytochrome and flowering time regulatory protein (PFT1) mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25-like mediator of RNA polymerase II transcription subunit 25-like mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25-like mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25-like mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi02010 ABC transporters 2
ghi00514 Other types of O-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi00514 Other types of O-glycan biosynthesis 2
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 2
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
sly03022 Basal transcription factors 2
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 5
sot03083 Polycomb repressive complex 3
sot04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01200 Carbon metabolism 4
nta00053 Ascorbate and aldarate metabolism 2
nta00010 Glycolysis / Gluconeogenesis 2
nta00620 Pyruvate metabolism 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 5
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04814 Motor proteins 2
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839141 103840588 103835463 106401100 106361923 106361861 107887167 107919383 121203454 102624904 100801664 100786254 100259509 7466913 7483938 11433176 25481943 25494748 101258928 102582320 107795738 107826460 107786082 4346673 103647359 123121169 123103466 100682446 123452291 110432905 100843505 66057138
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