ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	AT1G01630	Sec14p-like phosphatidylinositol transfer family protein
ath-u.5	AT1G01630	Sec14p-like phosphatidylinositol transfer family protein
ath-r.7	AT1G01630	Sec14p-like phosphatidylinositol transfer family protein
ath-e.2	AT1G01630	Sec14p-like phosphatidylinositol transfer family protein
ath-m.4.bio	AT1G01630	Sec14p-like phosphatidylinositol transfer family protein
ath-m.4.hor	AT1G01630	Sec14p-like phosphatidylinositol transfer family protein
ath-m.4.lig	AT1G01630	Sec14p-like phosphatidylinositol transfer family protein
ath-m.4.str	AT1G01630	Sec14p-like phosphatidylinositol transfer family protein
ath-m.4.tis	AT1G01630	Sec14p-like phosphatidylinositol transfer family protein
bra-r.6	103844666	phosphatidylinositol transfer protein 3
bna-r.1	106370862	phosphatidylinositol transfer protein 3-like
bna-r.1	106425988	phosphatidylinositol transfer protein 3-like
bna-r.1	106356506	phosphatidylinositol transfer protein 3-like
ghi-r.1	107938037	phosphatidylinositol transfer protein 3
ghi-r.1	107953590	random slug protein 5-like
ghi-r.1	107949627	phosphatidylinositol transfer protein 3
cit-r.1	102621600	uncharacterized LOC102621600
cit-r.1	102621304	CRAL-TRIO domain-containing protein YKL091C-like
gma-u.5	SSH2	polyphosphoinositide binding protein Ssh2p
gma-u.5	100797666	random slug protein 5-like
vvi-u.5	100247551	random slug protein 5-like
vvi-u.5	100252364	uncharacterized LOC100252364
ppo-u.5	7496526	uncharacterized LOC7496526
mtr-u.5	25501979	phosphatidylinositol transfer protein 3
mtr-u.5	11430466	phosphatidylinositol transfer protein 3
mtr-u.5	25501978	phosphatidylinositol transfer protein 3
sly-u.5	101268667	uncharacterized LOC101268667
sot-r.1	102605697	random slug protein 5
sot-r.1	102589873	random slug protein 5-like
nta-r.1	107807823	uncharacterized LOC107807823
nta-r.1	107804710	uncharacterized LOC107804710
nta-r.1	107805600	uncharacterized LOC107805600
osa-u.5	4334796	uncharacterized LOC4334796
osa-u.5	4326950	uncharacterized LOC4326950
zma-u.5	100282468	phosphatidylinositol transfer protein CSR1
zma-u.5	100283004	uncharacterized LOC100283004
zma-u.5	100283884	uncharacterized LOC100283884
tae-r.2	123087607	phosphatidylinositol transfer protein 3
tae-r.2	123072097	phosphatidylinositol transfer protein 3
hvu-r.1	123452777	phosphatidylinositol transfer protein 3-like
hvu-r.1	123445307	phosphatidylinositol transfer protein PDR16-like
hvu-r.1	123395112	phosphatidylinositol transfer protein 3-like
sbi-r.1	8059389	random slug protein 5
sbi-r.1	8081296	random slug protein 5
sbi-r.1	8060869	random slug protein 5
bdi-r.1	100831385	phosphatidylinositol transfer protein 3
bdi-r.1	100832745	phosphatidylinositol transfer protein 3
cre-r.1	CHLRE_01g055465v5	uncharacterized protein
cre-r.1	CHLRE_12g522100v5	uncharacterized protein

Top 50 coexpressed genes to AT1G01630 (ath-m.9 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT1G01630 (ath-m.9 coexpression data)

CoexMap"839231"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

Protein

NP_171669.1 [sequence] [blastp]

Subcellular
localization
wolf

cysk 6, cyto 2, extr 1, golg 1

(predict for NP_171669.1)

Subcellular
localization
TargetP

other 8

(predict for NP_171669.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for AT1G01630	ath-u.5 for AT1G01630	ath-r.7 for AT1G01630	ath-e.2 for AT1G01630	ath-m.4.bio for AT1G01630	ath-m.4.hor for AT1G01630	ath-m.4.lig for AT1G01630	ath-m.4.str for AT1G01630	ath-m.4.tis for AT1G01630	bra-r.6 for 103844666	bna-r.1 for 106370862	bna-r.1 for 106425988	bna-r.1 for 106356506	ghi-r.1 for 107938037	ghi-r.1 for 107953590	ghi-r.1 for 107949627	cit-r.1 for 102621600	cit-r.1 for 102621304	gma-u.5 for SSH2	gma-u.5 for 100797666	vvi-u.5 for 100247551	vvi-u.5 for 100252364	ppo-u.5 for 7496526	mtr-u.5 for 25501979	mtr-u.5 for 11430466	mtr-u.5 for 25501978	sly-u.5 for 101268667	sot-r.1 for 102605697	sot-r.1 for 102589873	nta-r.1 for 107807823	nta-r.1 for 107804710	nta-r.1 for 107805600	osa-u.5 for 4334796	osa-u.5 for 4326950	zma-u.5 for 100282468	zma-u.5 for 100283004	zma-u.5 for 100283884	tae-r.2 for 123087607	tae-r.2 for 123072097	hvu-r.1 for 123452777	hvu-r.1 for 123445307	hvu-r.1 for 123395112	sbi-r.1 for 8059389	sbi-r.1 for 8081296	sbi-r.1 for 8060869	bdi-r.1 for 100831385	bdi-r.1 for 100832745	cre-r.1 for CHLRE_01g055465v5	cre-r.1 for CHLRE_12g522100v5

Ortholog

Ortholog ID: 1440

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

SSH2

Function^*

Sec14p-like phosphatidylinositol transfer family protein

phosphatidylinositol transfer protein 3

phosphatidylinositol transfer protein 3-like

phosphatidylinositol transfer protein 3

CRAL-TRIO domain-containing protein YKL091C

uncharacterized LOC102621600

CRAL-TRIO domain-containing protein YKL091C-like

polyphosphoinositide binding protein Ssh2p

phosphatidylinositol transfer protein 3

random slug protein 5-like

uncharacterized LOC100252364

uncharacterized LOC7496526

phosphatidylinositol transfer protein 3

uncharacterized LOC101268667

random slug protein 5

random slug protein 5-like

uncharacterized LOC107804710

uncharacterized LOC107821881

uncharacterized LOC107819341

uncharacterized LOC4334796

uncharacterized LOC4326950

phosphatidylinositol transfer protein CSR1

uncharacterized LOC100283004

uncharacterized LOC100283884

phosphatidylinositol transfer protein 3

phosphatidylinositol transfer protein PDR16-like

phosphatidylinositol transfer protein 3-like

random slug protein 5

phosphatidylinositol transfer protein 3

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00520	Amino sugar and nucleotide sugar metabolism	4
bra01250	Biosynthesis of nucleotide sugars	4
bra00053	Ascorbate and aldarate metabolism	3
bra01240	Biosynthesis of cofactors	3
bra04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	2
ghi00030	Pentose phosphate pathway	2
ghi00710	Carbon fixation by Calvin cycle	2
ghi01200	Carbon metabolism	2
ghi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	2
ghi00062	Fatty acid elongation	2
ghi01212	Fatty acid metabolism	2
ghi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	5
cit00510	N-Glycan biosynthesis	3
cit00513	Various types of N-glycan biosynthesis	3
cit04626	Plant-pathogen interaction	2
cit00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00073	Cutin, suberine and wax biosynthesis	2
cit00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00941	Flavonoid biosynthesis	2
gma00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04820	Cytoskeleton in muscle cells	2
gma00541	Biosynthesis of various nucleotide sugars	2
gma01250	Biosynthesis of nucleotide sugars	2
gma00620	Pyruvate metabolism	2
gma00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi02010	ABC transporters	5
vvi00561	Glycerolipid metabolism	2
vvi00940	Phenylpropanoid biosynthesis	2
vvi00071	Fatty acid degradation	2
vvi04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00670	One carbon pool by folate	4
ppo00260	Glycine, serine and threonine metabolism	4
ppo01200	Carbon metabolism	4
ppo01230	Biosynthesis of amino acids	3
ppo01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00062	Fatty acid elongation	2
mtr04626	Plant-pathogen interaction	2
mtr02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00020	Citrate cycle (TCA cycle)	2
mtr01200	Carbon metabolism	2
mtr01210	2-Oxocarboxylic acid metabolism	2
mtr01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00195	Photosynthesis	6
mtr00190	Oxidative phosphorylation	5
mtr03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00010	Glycolysis / Gluconeogenesis	2
sly01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00940	Phenylpropanoid biosynthesis	3
sot04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04820	Cytoskeleton in muscle cells	2
nta00190	Oxidative phosphorylation	2
nta00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03060	Protein export	2
nta00010	Glycolysis / Gluconeogenesis	2
nta00071	Fatty acid degradation	2
nta00350	Tyrosine metabolism	2
nta00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00010	Glycolysis / Gluconeogenesis	2
nta00071	Fatty acid degradation	2
nta00350	Tyrosine metabolism	2
nta00620	Pyruvate metabolism	2
nta01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00062	Fatty acid elongation	6
osa01212	Fatty acid metabolism	4
osa04626	Plant-pathogen interaction	4
osa00061	Fatty acid biosynthesis	2
osa01040	Biosynthesis of unsaturated fatty acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00900	Terpenoid backbone biosynthesis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00062	Fatty acid elongation	8
zma04626	Plant-pathogen interaction	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae02010	ABC transporters	4
tae04981	Folate transport and metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00062	Fatty acid elongation	2
hvu04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00062	Fatty acid elongation	4
sbi04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00941	Flavonoid biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00564	Glycerophospholipid metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

839231

103844666

106370862

106356506

106434175

107949627

107886178

102621600

102621304

548015

100799549

100247551

100252364

7496526

25501979

11430466

25501978

101268667

102605697

102589873

107804710

107821881

107819341

4334796

4326950

100282468

100283004

100283884

123114326

123445307

123395112

123440735

8059389

8081296

8060869

100831385

100832745

66052195

5722562

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Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	9	1	3	3	2	2	2	1	3	1	2	3	2	3	2	3	3	2	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT1G01630 (ath-m.9 coexpression data)

Top 50 enrichment test to AT1G01630 (ath-m.9 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**