ATTED-II : GeneCoexpression result

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	AT1G01320	Tetratricopeptide repeat (TPR)-like superfamily protein
ath-u.5	AT1G01320	Tetratricopeptide repeat (TPR)-like superfamily protein
ath-r.7	AT1G01320	Tetratricopeptide repeat (TPR)-like superfamily protein
ath-e.2	AT1G01320	Tetratricopeptide repeat (TPR)-like superfamily protein
ath-m.4.bio	AT1G01320	Tetratricopeptide repeat (TPR)-like superfamily protein
ath-m.4.hor	AT1G01320	Tetratricopeptide repeat (TPR)-like superfamily protein
ath-m.4.lig	AT1G01320	Tetratricopeptide repeat (TPR)-like superfamily protein
ath-m.4.str	AT1G01320	Tetratricopeptide repeat (TPR)-like superfamily protein
ath-m.4.tis	AT1G01320	Tetratricopeptide repeat (TPR)-like superfamily protein
bra-r.6	103844641	protein TSS
bna-r.1	106370880	protein REDUCED CHLOROPLAST COVERAGE 1
bna-r.1	106398058	protein REDUCED CHLOROPLAST COVERAGE 1
ghi-r.1	107900948	protein TSS
ghi-r.1	107938163	protein TSS
ghi-r.1	107945864	protein TSS
cit-r.1	102621342	protein REDUCED CHLOROPLAST COVERAGE 1
gma-u.5	100784117	protein TSS
gma-u.5	100808136	protein TSS
vvi-u.5	100263581	protein REDUCED CHLOROPLAST COVERAGE 1
ppo-u.5	7486769	protein REDUCED CHLOROPLAST COVERAGE 1
ppo-u.5	7457397	protein REDUCED CHLOROPLAST COVERAGE 1
mtr-u.5	25500695	protein TSS
sly-u.5	101267609	protein REDUCED CHLOROPLAST COVERAGE 1
sly-u.5	101251035	protein REDUCED CHLOROPLAST COVERAGE 1-like
sot-r.1	102602924	protein TSS
sot-r.1	102581004	protein TSS-like
nta-r.1	107821736	protein REDUCED CHLOROPLAST COVERAGE 1
nta-r.1	107789285	protein REDUCED CHLOROPLAST COVERAGE 1
osa-u.5	4343046	protein REDUCED CHLOROPLAST COVERAGE 1
tae-r.2	123062134	protein TSS
tae-r.2	123070854	protein TSS
tae-r.2	123070855	protein TSS
hvu-r.1	123444470	protein TSS-like
hvu-r.1	123444471	protein TSS-like
sbi-r.1	8059721	protein TSS
bdi-r.1	100826321	protein TSS

Annotation

functional annotation

KEGG

GO BP

GO:0010906 [list] [network] regulation of glucose metabolic process	(1 genes)	IMP
GO:0019750 [list] [network] chloroplast localization	(23 genes)	IMP
GO:0006996 [list] [network] organelle organization	(868 genes)	IEA

GO CC

GO:0005829 [list] [network] cytosol	(2593 genes)	IDA
GO:0005576 [list] [network] extracellular region	(3158 genes)	HDA
GO:0005634 [list] [network] nucleus	(10367 genes)	IDA ISM

GO MF

GO:0003729 [list] [network] mRNA binding

(1514 genes)

IDA

Protein

NP_001184884.1 [sequence] [blastp]
NP_001321495.1 [sequence] [blastp]
NP_171639.3 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, cyto 4, mito 1, pero 1, cysk 1	(predict for NP_001184884.1)
nucl 4, cyto 4, mito 1, pero 1, cysk 1	(predict for NP_001321495.1)
nucl 4, cyto 4, mito 1, pero 1, cysk 1	(predict for NP_171639.3)

Subcellular
localization
TargetP

other 9	(predict for NP_001184884.1)
other 9	(predict for NP_001321495.1)
other 9	(predict for NP_171639.3)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for AT1G01320	ath-u.5 for AT1G01320	ath-r.7 for AT1G01320	ath-e.2 for AT1G01320	ath-m.4.bio for AT1G01320	ath-m.4.hor for AT1G01320	ath-m.4.lig for AT1G01320	ath-m.4.str for AT1G01320	ath-m.4.tis for AT1G01320	bra-r.6 for 103844641	bna-r.1 for 106370880	bna-r.1 for 106398058	ghi-r.1 for 107900948	ghi-r.1 for 107938163	ghi-r.1 for 107945864	cit-r.1 for 102621342	gma-u.5 for 100784117	gma-u.5 for 100808136	vvi-u.5 for 100263581	ppo-u.5 for 7486769	ppo-u.5 for 7457397	mtr-u.5 for 25500695	sly-u.5 for 101267609	sly-u.5 for 101251035	sot-r.1 for 102602924	sot-r.1 for 102581004	nta-r.1 for 107821736	nta-r.1 for 107789285	osa-u.5 for 4343046	tae-r.2 for 123062134	tae-r.2 for 123070854	tae-r.2 for 123070855	hvu-r.1 for 123444470	hvu-r.1 for 123444471	sbi-r.1 for 8059721	bdi-r.1 for 100826321

Ortholog

Ortholog ID: 7048

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

tae

hvu

sbi

bdi

Symbol

Function^*

Tetratricopeptide repeat (TPR)-like superfamily protein

protein TSS