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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   AT1G57540   40S ribosomal protein 
 ath-u.5   AT1G57540   40S ribosomal protein 
 ath-r.7   AT1G57540   40S ribosomal protein 
 ath-e.2   AT1G57540   40S ribosomal protein 
 ath-m.4.bio   AT1G57540   40S ribosomal protein 
 ath-m.4.hor   AT1G57540   40S ribosomal protein 
 ath-m.4.lig   AT1G57540   40S ribosomal protein 
 ath-m.4.str   AT1G57540   40S ribosomal protein 
 ath-m.4.tis   AT1G57540   40S ribosomal protein 
 bra-r.6   103838667   uncharacterized LOC103838667 
 bna-r.1   125606580   uncharacterized LOC125606580 
 bna-r.1   106434248   uncharacterized LOC106434248 
 ghi-r.1   107920276   uncharacterized LOC107920276 
 ghi-r.1   107930651   uncharacterized LOC107930651 
 cit-r.1   102625920   uncharacterized LOC102625920 
 gma-u.5   100305789   uncharacterized LOC100305789 
 gma-u.5   100793929   uncharacterized LOC100793929 
 ppo-u.5   18098455   uncharacterized LOC18098455 
 mtr-u.5   25485792   uncharacterized LOC25485792 
 sly-u.5   101251266   uncharacterized LOC101251266 
 sot-r.1   102604825   uncharacterized LOC102604825 
 nta-r.1   107803245   uncharacterized LOC107803245 
 osa-u.5   4327100   uncharacterized LOC4327100 
 zma-u.5   100277564   uncharacterized LOC100277564 
 tae-r.2   123117770   uncharacterized LOC123117770 
 tae-r.2   123078019   uncharacterized LOC123078019 
 tae-r.2   123060886   uncharacterized LOC123060886 
 hvu-r.1   123443362   uncharacterized LOC123443362 
 hvu-r.1   123398035   uncharacterized LOC123398035 
 sbi-r.1   110433940   uncharacterized LOC110433940 
 bdi-r.1   100824486   uncharacterized LOC100824486 

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Top 50 coexpressed genes to AT1G57540 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G57540 (ath-m.9 coexpression data)

CoexMap"842129"


athAT1G57540 | Entrez gene ID : 842129      
Species ath bra bna ghi cit gma ppo mtr sly sot nta osa zma tae hvu sbi bdi cre vvi
Paralog 9 1 2 2 1 2 1 1 1 1 1 1 1 3 2 1 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO MF
Protein NP_001077732.1 [sequence] [blastp]
NP_564723.1 [sequence] [blastp]
NP_974042.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 4,  chlo 4,  nucl_plas 1,  nucl 1,  plas 1  (predict for NP_001077732.1)
mito 4,  chlo 4,  nucl_plas 1,  nucl 1,  plas 1  (predict for NP_564723.1)
mito 4,  chlo 4,  nucl_plas 1,  nucl 1,  plas 1  (predict for NP_974042.1)
Subcellular
localization
TargetP
mito 5,  other 4  (predict for NP_001077732.1)
mito 5,  other 4  (predict for NP_564723.1)
mito 5,  other 4  (predict for NP_974042.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
AT1G57540
ath-u.5
for
AT1G57540
ath-r.7
for
AT1G57540
ath-e.2
for
AT1G57540
ath-m.4.bio
for
AT1G57540
ath-m.4.hor
for
AT1G57540
ath-m.4.lig
for
AT1G57540
ath-m.4.str
for
AT1G57540
ath-m.4.tis
for
AT1G57540
bra-r.6
for
103838667
bna-r.1
for
125606580
bna-r.1
for
106434248
ghi-r.1
for
107920276
ghi-r.1
for
107930651
cit-r.1
for
102625920
gma-u.5
for
100305789
gma-u.5
for
100793929
ppo-u.5
for
18098455
mtr-u.5
for
25485792
sly-u.5
for
101251266
sot-r.1
for
102604825
nta-r.1
for
107803245
osa-u.5
for
4327100
zma-u.5
for
100277564
tae-r.2
for
123117770
tae-r.2
for
123078019
tae-r.2
for
123060886
hvu-r.1
for
123443362
hvu-r.1
for
123398035
sbi-r.1
for
110433940
bdi-r.1
for
100824486


Ortholog ID: 8747
Species ath bra bna bna ghi ghi cit gma gma ppo mtr sly sot nta osa zma tae tae tae hvu hvu sbi bdi
Symbol AT1G57540 LOC103838667 LOC125606580 LOC106368611 LOC107920276 LOC107930651 LOC102625920 LOC100305789 LOC100793929 LOC18098455 LOC25485792 LOC101251266 LOC102604825 LOC107803245 LOC4327100 LOC100277564 LOC123078019 LOC123177105 LOC123069521 LOC123443362 LOC123398035 LOC110433940 LOC100824486
Function* 40S ribosomal protein uncharacterized LOC103838667 uncharacterized LOC125606580 uncharacterized LOC106368611 uncharacterized LOC107920276 uncharacterized LOC107930651 uncharacterized LOC102625920 uncharacterized LOC100305789 uncharacterized LOC100793929 uncharacterized LOC18098455 uncharacterized LOC25485792 uncharacterized LOC101251266 uncharacterized LOC102604825 uncharacterized LOC107803245 uncharacterized LOC4327100 uncharacterized LOC100277564 uncharacterized LOC123078019 uncharacterized LOC123177105 uncharacterized LOC123069521 uncharacterized LOC123443362 uncharacterized LOC123398035 uncharacterized LOC110433940 uncharacterized LOC100824486
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03250 Viral life cycle - HIV-1 2
ath03082 ATP-dependent chromatin remodeling 2
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 2
bra03040 Spliceosome 2
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00190 Oxidative phosphorylation 6
cit03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 3
zma04141 Protein processing in endoplasmic reticulum 2
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
hvu03018 RNA degradation 2
hvu03030 DNA replication 2
hvu03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00730 Thiamine metabolism 2
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842129 103838667 125606580 106368611 107920276 107930651 102625920 100305789 100793929 18098455 25485792 101251266 102604825 107803245 4327100 100277564 123078019 123177105 123069521 123443362 123398035 110433940 100824486
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