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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   CRR28   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-u.5   CRR28   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-r.7   CRR28   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-e.2   CRR28   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.bio   CRR28   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.hor   CRR28   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.lig   CRR28   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.str   CRR28   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.tis   CRR28   Tetratricopeptide repeat (TPR)-like superfamily protein 
 bra-r.6   103862633   pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial 
 bna-r.1   106390399   pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial 
 bna-r.1   106372068   pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial-like 
 ghi-r.1   107899607   pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial 
 ghi-r.1   107948960   pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial 
 cit-r.1   102620736   pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial 
 ppo-u.5   7461581   pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial 
 mtr-u.5   11408927   pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial 
 sly-u.5   101251285   pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial 
 sot-r.1   102592045   pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial 
 nta-r.1   107759601   pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial-like 
 nta-r.1   107794828   pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial-like 
 osa-u.5   4342622   pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial 
 zma-u.5   103648228   pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial 
 tae-r.2   123123512   pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial 
 tae-r.2   123114023   pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial 
 tae-r.2   123105693   pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial 
 hvu-r.1   123453067   pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial 
 sbi-r.1   8063656   pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial 
 bdi-r.1   100820833   pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial 

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Top 50 coexpressed genes to CRR28 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CRR28 (ath-m.9 coexpression data)

CoexMap"842263"


athCRR28 | Entrez gene ID : 842263      
Species ath bra bna ghi cit ppo mtr sly sot nta osa zma tae hvu sbi bdi vvi gma cre
Paralog 9 1 2 2 1 1 1 1 1 2 1 1 3 1 1 1 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0016556 [list] [network] mRNA modification  (34 genes)  IMP  
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO:0009507 [list] [network] chloroplast  (5014 genes)  IDA  
GO MF
GO:0004519 [list] [network] endonuclease activity  (114 genes)  IDA  
GO:0008270 [list] [network] zinc ion binding  (391 genes)  IEA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_176180.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  mito 1  (predict for NP_176180.1)
Subcellular
localization
TargetP
chlo 3  (predict for NP_176180.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
CRR28
ath-u.5
for
CRR28
ath-r.7
for
CRR28
ath-e.2
for
CRR28
ath-m.4.bio
for
CRR28
ath-m.4.hor
for
CRR28
ath-m.4.lig
for
CRR28
ath-m.4.str
for
CRR28
ath-m.4.tis
for
CRR28
bra-r.6
for
103862633
bna-r.1
for
106390399
bna-r.1
for
106372068
ghi-r.1
for
107899607
ghi-r.1
for
107948960
cit-r.1
for
102620736
ppo-u.5
for
7461581
mtr-u.5
for
11408927
sly-u.5
for
101251285
sot-r.1
for
102592045
nta-r.1
for
107759601
nta-r.1
for
107794828
osa-u.5
for
4342622
zma-u.5
for
103648228
tae-r.2
for
123123512
tae-r.2
for
123114023
tae-r.2
for
123105693
hvu-r.1
for
123453067
sbi-r.1
for
8063656
bdi-r.1
for
100820833


Ortholog ID: 10525
Species ath bra bna bna ghi ghi cit ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol CRR28 LOC103862633 LOC106390399 LOC106372068 LOC107899607 LOC107948960 LOC102620736 LOC7461581 LOC11408927 LOC101251285 LOC102592045 LOC107759601 LOC107794828 LOC4342622 LOC103648228 LOC123123512 LOC123114023 LOC123105693 LOC123453067 LOC8063656 LOC100820833
Function* Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial-like pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial-like pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial-like pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00860 Porphyrin metabolism 3
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 3
sbi00250 Alanine, aspartate and glutamate metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842263 103862633 106390399 106372068 107899607 107948960 102620736 7461581 11408927 101251285 102592045 107759601 107794828 4342622 103648228 123123512 123114023 123105693 123453067 8063656 100820833
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