ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	ATTPS6	UDP-Glycosyltransferase / trehalose-phosphatase family protein
ath-u.5	ATTPS6	UDP-Glycosyltransferase / trehalose-phosphatase family protein
ath-r.7	ATTPS6	UDP-Glycosyltransferase / trehalose-phosphatase family protein
ath-e.2	ATTPS6	UDP-Glycosyltransferase / trehalose-phosphatase family protein
ath-m.4.bio	ATTPS6	UDP-Glycosyltransferase / trehalose-phosphatase family protein
ath-m.4.hor	ATTPS6	UDP-Glycosyltransferase / trehalose-phosphatase family protein
ath-m.4.lig	ATTPS6	UDP-Glycosyltransferase / trehalose-phosphatase family protein
ath-m.4.str	ATTPS6	UDP-Glycosyltransferase / trehalose-phosphatase family protein
ath-m.4.tis	ATTPS6	UDP-Glycosyltransferase / trehalose-phosphatase family protein
ath-u.5	TPS11	trehalose phosphatase/synthase 11
ath-u.5	TPS5	trehalose phosphatase/synthase 5
ath-u.5	TPS7	trehalose-phosphatase/synthase 7
bra-r.6	103852641	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 8
bra-r.6	103836479	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7
bra-r.6	103835645	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9
bna-r.1	106440216	alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5
bna-r.1	106353870	alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6-like
bna-r.1	111213570	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7
ghi-r.1	107933574	alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5
ghi-r.1	107905827	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7
cit-r.1	102629877	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9
cit-r.1	102626436	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7
cit-r.1	102615793	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11
gma-u.5	100787744	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 8
gma-u.5	100782799	alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5
gma-u.5	100775779	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10
vvi-u.5	100246842	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10
vvi-u.5	100252552	alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6-like
vvi-u.5	100265140	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7
ppo-u.5	7458026	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9
ppo-u.5	7455893	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7
ppo-u.5	7457812	alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6
mtr-u.5	25501287	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9
mtr-u.5	11428387	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11
mtr-u.5	11406035	alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6
sly-u.5	101259279	alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6
sly-u.5	101262611	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9
sly-u.5	101255690	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9
sot-r.1	102580076	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7
sot-r.1	102583599	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7
sot-r.1	102585196	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9
nta-r.1	107825688	putative alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7
nta-r.1	107762801	putative alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7
nta-r.1	107766640	alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5
osa-u.5	4330971	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9
osa-u.5	4346981	alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6
zma-u.5	100281927	uncharacterized LOC100281927
zma-u.5	100501482	uncharacterized LOC100501482
zma-u.5	103651208	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7
tae-r.2	123120080	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7
tae-r.2	123145852	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11
tae-r.2	123111908	alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6
hvu-r.1	123449266	alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6-like
hvu-r.1	123452519	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7
sbi-r.1	8067517	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7
sbi-r.1	8072076	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7
sbi-r.1	8085273	alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6
bdi-r.1	100824241	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7
bdi-r.1	100844084	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9
bdi-r.1	100841352	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 8
cre-r.1	CHLRE_06g278221v5	uncharacterized protein

Top 50 coexpressed genes to ATTPS6 (ath-m.9 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to ATTPS6 (ath-m.9 coexpression data)

CoexMap"843130"

[Cytoscape]

Annotation

functional annotation

KEGG

ath00500 [list] [network] Starch and sucrose metabolism (172 genes)

GO BP

GO:0005992 [list] [network] trehalose biosynthetic process

(7 genes)

IGI

GO CC

GO:0009507 [list] [network] chloroplast

(5014 genes)

ISM

GO MF

GO:0003825 [list] [network] alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	(11 genes)	IGI IMP
GO:0004805 [list] [network] trehalose-phosphatase activity	(12 genes)	IGI IMP
GO:0016757 [list] [network] glycosyltransferase activity	(554 genes)	ISS

Protein

NP_001322467.1 [sequence] [blastp]
NP_564918.1 [sequence] [blastp]
NP_974105.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, nucl 4, chlo 1	(predict for NP_001322467.1)
cyto 6, chlo 1, nucl 1, cysk 1, golg 1, chlo_mito 1, nucl_plas 1	(predict for NP_564918.1)
cyto 4, nucl 4, chlo 1	(predict for NP_974105.1)

Subcellular
localization
TargetP

mito 2	(predict for NP_001322467.1)
mito 2	(predict for NP_564918.1)
mito 2	(predict for NP_974105.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for ATTPS6	ath-u.5 for ATTPS6	ath-r.7 for ATTPS6	ath-e.2 for ATTPS6	ath-m.4.bio for ATTPS6	ath-m.4.hor for ATTPS6	ath-m.4.lig for ATTPS6	ath-m.4.str for ATTPS6	ath-m.4.tis for ATTPS6	ath-u.5 for TPS11	ath-u.5 for TPS5	ath-u.5 for TPS7	bra-r.6 for 103852641	bra-r.6 for 103836479	bra-r.6 for 103835645	bna-r.1 for 106440216	bna-r.1 for 106353870	bna-r.1 for 111213570	ghi-r.1 for 107933574	ghi-r.1 for 107905827	cit-r.1 for 102629877	cit-r.1 for 102626436	cit-r.1 for 102615793	gma-u.5 for 100787744	gma-u.5 for 100782799	gma-u.5 for 100775779	vvi-u.5 for 100246842	vvi-u.5 for 100252552	vvi-u.5 for 100265140	ppo-u.5 for 7458026	ppo-u.5 for 7455893	ppo-u.5 for 7457812	mtr-u.5 for 25501287	mtr-u.5 for 11428387	mtr-u.5 for 11406035	sly-u.5 for 101259279	sly-u.5 for 101262611	sly-u.5 for 101255690	sot-r.1 for 102580076	sot-r.1 for 102583599	sot-r.1 for 102585196	nta-r.1 for 107825688	nta-r.1 for 107762801	nta-r.1 for 107766640	osa-u.5 for 4330971	osa-u.5 for 4346981	zma-u.5 for 100281927	zma-u.5 for 100501482	zma-u.5 for 103651208	tae-r.2 for 123120080	tae-r.2 for 123145852	tae-r.2 for 123111908	hvu-r.1 for 123449266	hvu-r.1 for 123452519	sbi-r.1 for 8067517	sbi-r.1 for 8072076	sbi-r.1 for 8085273	bdi-r.1 for 100824241	bdi-r.1 for 100844084	bdi-r.1 for 100841352	cre-r.1 for CHLRE_06g278221v5

Ortholog

Ortholog ID: 237

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

TPS11

TPS7

TPS10

Function^*

trehalose phosphatase/synthase 11

trehalose-phosphatase/synthase 7

trehalose phosphate synthase

probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 8

probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7

probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10

alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7

probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6

probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7

probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 8

probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7

probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11

probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10

probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7

alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6

probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11

probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11

alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6

probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7

probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11

probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10

alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6

putative alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7

probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10

probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7

alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7

putative trehalose phosphatase/synthase family protein

probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7

probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 8

probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7

alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6

probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11

probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7

probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00500	Starch and sucrose metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04626	Plant-pathogen interaction	2
ath04145	Phagosome	2
ath04148	Efferocytosis	2
ath04517	IgSF CAM signaling	2
ath04518	Integrin signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00500	Starch and sucrose metabolism	4
ath04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	3
bra03050	Proteasome	3
bra04120	Ubiquitin mediated proteolysis	2
bra01200	Carbon metabolism	2
bra00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00500	Starch and sucrose metabolism	4
bna00520	Amino sugar and nucleotide sugar metabolism	2
bna01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	7
bna00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00500	Starch and sucrose metabolism	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	3
ghi00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00500	Starch and sucrose metabolism	4
ghi00100	Steroid biosynthesis	2
ghi00561	Glycerolipid metabolism	2
ghi00564	Glycerophospholipid metabolism	2
ghi00565	Ether lipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00500	Starch and sucrose metabolism	4
ghi00440	Phosphonate and phosphinate metabolism	2
ghi00564	Glycerophospholipid metabolism	2
ghi04016	MAPK signaling pathway - plant	2
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00500	Starch and sucrose metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00500	Starch and sucrose metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00500	Starch and sucrose metabolism	2
gma00230	Purine metabolism	2
gma00232	Caffeine metabolism	2
gma01232	Nucleotide metabolism	2
gma04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00500	Starch and sucrose metabolism	4
gma00640	Propanoate metabolism	2
gma00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00250	Alanine, aspartate and glutamate metabolism	2
vvi04016	MAPK signaling pathway - plant	2
vvi00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04626	Plant-pathogen interaction	3
vvi00500	Starch and sucrose metabolism	2
vvi04075	Plant hormone signal transduction	2
vvi00053	Ascorbate and aldarate metabolism	2
vvi00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00500	Starch and sucrose metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00500	Starch and sucrose metabolism	2
sly00520	Amino sugar and nucleotide sugar metabolism	2
sly01250	Biosynthesis of nucleotide sugars	2
sly01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	2
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00500	Starch and sucrose metabolism	4
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	2
nta04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	2
nta04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00195	Photosynthesis	6
osa04016	MAPK signaling pathway - plant	2
osa04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	4
zma00500	Starch and sucrose metabolism	2
zma00380	Tryptophan metabolism	2
zma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04016	MAPK signaling pathway - plant	3
tae04075	Plant hormone signal transduction	3
tae00051	Fructose and mannose metabolism	3
tae00520	Amino sugar and nucleotide sugar metabolism	3
tae01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00500	Starch and sucrose metabolism	6
tae04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04016	MAPK signaling pathway - plant	3
tae04075	Plant hormone signal transduction	3
tae00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00500	Starch and sucrose metabolism	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00500	Starch and sucrose metabolism	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00500	Starch and sucrose metabolism	4

Expression

Expression pattern

Entrez Gene ID^*

816385

837152

842309

103852641

103836479

103862621

106440216

111213570

106415110

107886340

107886610

107909640

102626436

102612059

102611843

100787744

100800847

100810498

100246842

100253824

100259175

7457812

7462667

7465995

25501287

11428387

25482569

101259279

101262611

101255690

102583599

102586120

107058011

107825166

107810838

107808783

4346917

4324621

4324423

100501519

109942025

100191265

123062055

123182644

123079168

123406139

123447107

8085273

8082723

8075095

100844084

100829189

100821815

5723623

The preparation time of this page was 0.2 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	12	3	3	2	3	3	3	3	3	3	3	3	2	3	3	2	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to ATTPS6 (ath-m.9 coexpression data)

Top 50 enrichment test to ATTPS6 (ath-m.9 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**