ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	NAP	NAC-like, activated by AP3/PI
ath-u.5	NAP	NAC-like, activated by AP3/PI
ath-r.7	NAP	NAC-like, activated by AP3/PI
ath-e.2	NAP	NAC-like, activated by AP3/PI
ath-m.4.bio	NAP	NAC-like, activated by AP3/PI
ath-m.4.hor	NAP	NAC-like, activated by AP3/PI
ath-m.4.lig	NAP	NAC-like, activated by AP3/PI
ath-m.4.str	NAP	NAC-like, activated by AP3/PI
ath-m.4.tis	NAP	NAC-like, activated by AP3/PI
bra-r.6	NAP	NAC transcription factor 29
bra-r.6	103831344	NAC transcription factor 29
bna-r.1	106397396	NAC transcription factor 29-like
bna-r.1	106402938	NAC transcription factor 29
bna-r.1	106354073	NAC transcription factor 29-like
ghi-r.1	107887374	NAC transcription factor 29-like
ghi-r.1	107946409	NAC transcription factor 29
ghi-r.1	107918768	NAC transcription factor 29
cit-r.1	102608057	NAC transcription factor 29
gma-u.5	NAC26	NAC domain protein
gma-u.5	NAC51	transcription factor NAC51
gma-u.5	NAC1	NAC domain protein NAC1
vvi-u.5	104879728	NAC transcription factor 29
vvi-u.5	100263939	NAC domain-containing protein 68
ppo-u.5	7498182	NAC domain-containing protein 2
mtr-u.5	11420119	NAC domain-containing protein 2
mtr-u.5	11445056	NAC domain-containing protein 1
sly-u.5	101259609	NAC domain-containing protein 2-like
sly-u.5	101244243	NAC transcription factor 32-like
sly-u.5	NAP1	NAC domain-containing protein 1
sot-r.1	102591523	NAC transcription factor 29-like
sot-r.1	NAC2	NAC transcription factor 29-like
nta-r.1	107811757	NAC domain-containing protein 2-like
nta-r.1	107781532	NAC domain-containing protein 1
osa-u.5	9266867	NAC domain-containing protein 58-like
osa-u.5	4342753	NAC domain-containing protein 67-like
osa-u.5	4327485	NAC domain-containing protein 68-like
zma-u.5	103634603	NAC transcription factor NAM-2
zma-u.5	100273749	uncharacterized LOC100273749
zma-u.5	100280247	uncharacterized LOC100280247
tae-r.2	123143310	NAC domain-containing protein 67
tae-r.2	123135738	NAC domain-containing protein 67
tae-r.2	123057835	NAC transcription factor 29
hvu-r.1	123403974	NAC domain-containing protein 67-like
hvu-r.1	123444699	NAC domain-containing protein 68-like
hvu-r.1	123439382	NAC domain-containing protein 2-like
sbi-r.1	8069118	NAC domain-containing protein 67
sbi-r.1	8072366	NAC transcription factor NAM-B2
sbi-r.1	8078572	NAC domain-containing protein 102
bdi-r.1	100826391	NAC domain-containing protein 18
bdi-r.1	100834178	NAC domain-containing protein 68
bdi-r.1	100835143	NAC transcription factor NAM-B1

Top 50 coexpressed genes to NAP (ath-m.9 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to NAP (ath-m.9 coexpression data)

CoexMap"843282"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0009835 [list] [network] fruit ripening	(1 genes)	IMP
GO:0009825 [list] [network] multidimensional cell growth	(43 genes)	IMP
GO:0010150 [list] [network] leaf senescence	(128 genes)	IMP
GO:0009908 [list] [network] flower development	(378 genes)	IMP
GO:0009793 [list] [network] embryo development ending in seed dormancy	(569 genes)	IMP
GO:0006355 [list] [network] regulation of DNA-templated transcription	(1618 genes)	IEA

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

IDA ISM

GO MF

GO:0000976 [list] [network] transcription cis-regulatory region binding	(716 genes)	IPI
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1620 genes)	ISS
GO:0005515 [list] [network] protein binding	(5363 genes)	IPI

Protein

NP_564966.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 7, pero 1, chlo 1, cyto 1

(predict for NP_564966.1)

Subcellular
localization
TargetP

other 9

(predict for NP_564966.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for NAP	ath-u.5 for NAP	ath-r.7 for NAP	ath-e.2 for NAP	ath-m.4.bio for NAP	ath-m.4.hor for NAP	ath-m.4.lig for NAP	ath-m.4.str for NAP	ath-m.4.tis for NAP	bra-r.6 for NAP	bra-r.6 for 103831344	bna-r.1 for 106397396	bna-r.1 for 106402938	bna-r.1 for 106354073	ghi-r.1 for 107887374	ghi-r.1 for 107946409	ghi-r.1 for 107918768	cit-r.1 for 102608057	gma-u.5 for NAC26	gma-u.5 for NAC51	gma-u.5 for NAC1	vvi-u.5 for 104879728	vvi-u.5 for 100263939	ppo-u.5 for 7498182	mtr-u.5 for 11420119	mtr-u.5 for 11445056	sly-u.5 for 101259609	sly-u.5 for 101244243	sly-u.5 for NAP1	sot-r.1 for 102591523	sot-r.1 for NAC2	nta-r.1 for 107811757	nta-r.1 for 107781532	osa-u.5 for 9266867	osa-u.5 for 4342753	osa-u.5 for 4327485	zma-u.5 for 103634603	zma-u.5 for 100273749	zma-u.5 for 100280247	tae-r.2 for 123143310	tae-r.2 for 123135738	tae-r.2 for 123057835	hvu-r.1 for 123403974	hvu-r.1 for 123444699	hvu-r.1 for 123439382	sbi-r.1 for 8069118	sbi-r.1 for 8072366	sbi-r.1 for 8078572	bdi-r.1 for 100826391	bdi-r.1 for 100834178	bdi-r.1 for 100835143

Ortholog

Ortholog ID: 887

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

NAP

NAC51

NAC1

NAP2

NAC2

Function^*

NAC-like, activated by AP3/PI

NAC transcription factor 29

NAC transcription factor 29-like

NAC transcription factor 29

NAC transcription factor 29-like

NAC transcription factor 29

transcription factor NAC51

NAC domain protein NAC1

NAC domain-containing protein 2

NAC transcription factor 29

NAC domain-containing protein 68

NAC domain-containing protein 2

NAC domain-containing protein 1

NAC domain-containing protein 2-like

NAC transcription factor 32-like

NAC domain-containing protein 2

NAC transcription factor 29-like

NAC domain-containing protein 2

NAC domain-containing protein 1-like

NAC domain-containing protein 68-like

NAC domain-containing protein 58-like

NAC transcription factor 29

uncharacterized LOC100273749

uncharacterized LOC100285247

NAC transcription factor NAM-B2

NAC transcription factor 29

NAC domain-containing protein 2

NAC domain-containing protein 68

NAC domain-containing protein 2-like

NAC transcription factor 29

NAC transcription factor 25

NAC domain-containing protein 18

NAC transcription factor NAM-B1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00250	Alanine, aspartate and glutamate metabolism	4
bna00260	Glycine, serine and threonine metabolism	4
bna00270	Cysteine and methionine metabolism	4
bna00280	Valine, leucine and isoleucine degradation	4
bna00630	Glyoxylate and dicarboxylate metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04146	Peroxisome	2
bna00910	Nitrogen metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00910	Nitrogen metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00500	Starch and sucrose metabolism	3
cit00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00630	Glyoxylate and dicarboxylate metabolism	3
gma01200	Carbon metabolism	3
gma01240	Biosynthesis of cofactors	2
gma00640	Propanoate metabolism	2
gma00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00130	Ubiquinone and other terpenoid-quinone biosynthesis	4
mtr00350	Tyrosine metabolism	4
mtr00360	Phenylalanine metabolism	4
mtr01240	Biosynthesis of cofactors	4
mtr00270	Cysteine and methionine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00280	Valine, leucine and isoleucine degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04016	MAPK signaling pathway - plant	4
osa04626	Plant-pathogen interaction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00630	Glyoxylate and dicarboxylate metabolism	2
osa01200	Carbon metabolism	2
osa00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04016	MAPK signaling pathway - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00250	Alanine, aspartate and glutamate metabolism	3
tae01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04075	Plant hormone signal transduction	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04712	Circadian rhythm - plant	2
hvu00561	Glycerolipid metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

843282

103831467

103831344

106402938

106354073

106353830

107887374

107946409

107918768

102608057

100301891

732552

100785110

104879728

100263939

7498182

11420119

11445056

101259609

101244243

101248665

102591523

102580312

107776258

107775833

107827328

4327485

4332717

4351369

100273749

100285247

103634720

123120411

123092251

100682505

123439382

123452952

8083036

8084562

8067141

100826391

100835143

The preparation time of this page was 0.1 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	9	2	3	3	1	3	2	1	2	3	2	2	3	3	3	3	3	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to NAP (ath-m.9 coexpression data)

Top 50 enrichment test to NAP (ath-m.9 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**