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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   GTE3   global transcription factor group E3 
 ath-u.5   GTE3   global transcription factor group E3 
 ath-r.7   GTE3   global transcription factor group E3 
 ath-e.2   GTE3   global transcription factor group E3 
 ath-m.4.bio   GTE3   global transcription factor group E3 
 ath-m.4.hor   GTE3   global transcription factor group E3 
 ath-m.4.lig   GTE3   global transcription factor group E3 
 ath-m.4.str   GTE3   global transcription factor group E3 
 ath-m.4.tis   GTE3   global transcription factor group E3 
 ath-u.5   GTE7   global transcription factor group E7 
 ath-u.5   GTE4   global transcription factor group E4 
 bra-r.6   103844056   transcription factor GTE4 
 bra-r.6   103836487   transcription factor GTE4 
 bna-r.1   125599993   transcription factor GTE4-like 
 bna-r.1   111197762   transcription factor GTE4 
 ghi-r.1   107934351   transcription factor GTE4 
 ghi-r.1   107934344   transcription factor GTE4 
 ghi-r.1   107934343   transcription factor GTE4 
 cit-r.1   102617308   transcription factor GTE4 
 cit-r.1   102625848   transcription factor GTE2 
 cit-r.1   102616325   transcription factor GTE2-like 
 gma-u.5   100776603   transcription factor GTE7 
 gma-u.5   100780669   transcription factor GTE4 
 gma-u.5   100781720   transcription factor GTE4 
 vvi-u.5   100264393   transcription factor GTE4 
 vvi-u.5   100255658   transcription factor GTE4 
 ppo-u.5   7478691   transcription factor GTE7 
 ppo-u.5   18103285   transcription factor GTE4 
 ppo-u.5   18104517   transcription factor GTE4 
 mtr-u.5   11407222   transcription factor GTE7 
 mtr-u.5   11409064   transcription factor GTE4 
 mtr-u.5   11407221   transcription factor GTE7 
 sly-u.5   101264139   transcription factor GTE3, chloroplastic-like 
 sly-u.5   101244421   transcription factor GTE4 
 sly-u.5   101252343   transcription factor GTE7 
 sot-r.1   BRP1   bromodomain-containing RNA-binding protein 1 
 sot-r.1   102587679   transcription factor GTE4 
 sot-r.1   102601488   transcription factor GTE4-like 
 nta-r.1   107764219   transcription factor GTE7 
 nta-r.1   107817929   transcription factor GTE7-like 
 nta-r.1   107820957   transcription factor GTE4 
 osa-u.5   4325254   transcription factor GTE3, chloroplastic 
 osa-u.5   4328885   transcription factor GTE4 
 zma-u.5   103654735   transcription factor GTE4 
 zma-u.5   100274451   uncharacterized LOC100274451 
 zma-u.5   103626987   transcription factor GTE4 
 tae-r.2   123139179   transcription factor GTE4 
 tae-r.2   123060664   transcription factor GTE3, chloroplastic 
 tae-r.2   123144460   transcription factor GTE4 
 hvu-r.1   123443142   transcription factor GTE5, chloroplastic-like 
 hvu-r.1   123406381   transcription factor GTE4-like 
 sbi-r.1   8078332   transcription factor GTE4 
 sbi-r.1   8081417   transcription factor GTE4 
 bdi-r.1   100845401   transcription factor GTE4 
 bdi-r.1   100830810   transcription factor GTE4 
 cre-r.1   CHLRE_08g367300v5   uncharacterized protein 

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Top 50 coexpressed genes to GTE3 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to GTE3 (ath-m.9 coexpression data)

CoexMap"843646"


athGTE3 | Entrez gene ID : 843646      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 11 2 2 3 3 3 2 3 3 3 3 3 2 3 3 2 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0042393 [list] [network] histone binding  (50 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001320310.1 [sequence] [blastp]
NP_177458.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 1,  plas 1,  nucl 1,  vacu 1,  E.R. 1,  golg 1,  chlo_mito 1,  E.R._vacu 1,  cysk_plas 1,  mito_plas 1  (predict for NP_001320310.1)
nucl 5,  cyto 4,  chlo 1,  mito 1,  chlo_mito 1  (predict for NP_177458.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_001320310.1)
chlo 8  (predict for NP_177458.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
GTE3
ath-u.5
for
GTE3
ath-r.7
for
GTE3
ath-e.2
for
GTE3
ath-m.4.bio
for
GTE3
ath-m.4.hor
for
GTE3
ath-m.4.lig
for
GTE3
ath-m.4.str
for
GTE3
ath-m.4.tis
for
GTE3
ath-u.5
for
GTE7
ath-u.5
for
GTE4
bra-r.6
for
103844056
bra-r.6
for
103836487
bna-r.1
for
125599993
bna-r.1
for
111197762
ghi-r.1
for
107934351
ghi-r.1
for
107934344
ghi-r.1
for
107934343
cit-r.1
for
102617308
cit-r.1
for
102625848
cit-r.1
for
102616325
gma-u.5
for
100776603
gma-u.5
for
100780669
gma-u.5
for
100781720
vvi-u.5
for
100264393
vvi-u.5
for
100255658
ppo-u.5
for
7478691
ppo-u.5
for
18103285
ppo-u.5
for
18104517
mtr-u.5
for
11407222
mtr-u.5
for
11409064
mtr-u.5
for
11407221
sly-u.5
for
101264139
sly-u.5
for
101244421
sly-u.5
for
101252343
sot-r.1
for
BRP1
sot-r.1
for
102587679
sot-r.1
for
102601488
nta-r.1
for
107764219
nta-r.1
for
107817929
nta-r.1
for
107820957
osa-u.5
for
4325254
osa-u.5
for
4328885
zma-u.5
for
103654735
zma-u.5
for
100274451
zma-u.5
for
103626987
tae-r.2
for
123139179
tae-r.2
for
123060664
tae-r.2
for
123144460
hvu-r.1
for
123443142
hvu-r.1
for
123406381
sbi-r.1
for
8078332
sbi-r.1
for
8081417
bdi-r.1
for
100845401
bdi-r.1
for
100830810
cre-r.1
for
CHLRE_08g367300v5


Ortholog ID: 768
Species ath ath ath bra bra bra bna bna bna ghi ghi ghi cit cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa osa zma zma zma tae tae tae hvu hvu sbi sbi bdi bdi cre
Symbol GTE3 GTE7 GTE4 LOC103835940 LOC103855876 LOC103852827 LOC106401563 LOC106365706 LOC106399515 LOC107934343 LOC107917954 LOC107928883 LOC102625848 LOC102616325 LOC102613613 LOC100780669 LOC100802622 LOC100817007 LOC100255658 LOC100245782 LOC7478691 LOC7487584 LOC7467458 LOC11407222 LOC11407221 LOC25487764 LOC101264139 LOC101244421 LOC543627 LOC102587679 LOC102601488 LOC102589259 LOC107831423 LOC107791115 LOC107767882 LOC4325254 LOC4328885 LOC103654735 LOC100274451 LOC103649581 LOC123144460 LOC123069218 LOC123127380 LOC123443142 LOC123406381 LOC8078332 LOC8081417 LOC100845401 LOC100830810 CHLRE_08g367300v5
Function* global transcription factor group E3 global transcription factor group E7 global transcription factor group E4 transcription factor GTE5, chloroplastic transcription factor GTE2 transcription factor GTE3, chloroplastic transcription factor GTE4 transcription factor GTE4 transcription factor GTE3, chloroplastic transcription factor GTE4 transcription factor GTE4 transcription factor GTE7 transcription factor GTE2 transcription factor GTE2-like transcription factor GTE4 transcription factor GTE4 transcription factor GTE7 transcription factor GTE4 transcription factor GTE4 transcription factor GTE7 transcription factor GTE7 transcription factor GTE4 transcription factor GTE4 transcription factor GTE7 transcription factor GTE7 transcription factor GTE4 transcription factor GTE3, chloroplastic-like transcription factor GTE4 PSTVd RNA-binding protein Virp1d transcription factor GTE4 transcription factor GTE4-like transcription factor GTE7-like transcription factor GTE7-like transcription factor GTE4 transcription factor GTE4-like transcription factor GTE3, chloroplastic transcription factor GTE4 transcription factor GTE4 uncharacterized LOC100274451 uncharacterized LOC103649581 transcription factor GTE4 transcription factor GTE3, chloroplastic transcription factor GTE4 transcription factor GTE5, chloroplastic-like transcription factor GTE4-like transcription factor GTE4 transcription factor GTE4 transcription factor GTE4 transcription factor GTE4 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00562 Inositol phosphate metabolism 2
ghi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
gma00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00310 Lysine degradation 4
gma03082 ATP-dependent chromatin remodeling 3
gma04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 6
ppo03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 3
sot04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00220 Arginine biosynthesis 2
nta00250 Alanine, aspartate and glutamate metabolism 2
nta00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae04148 Efferocytosis 2
tae03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
sbi00510 N-Glycan biosynthesis 2
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 2
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843646 836689 837133 103835940 103855876 103852827 106401563 106365706 106399515 107934343 107917954 107928883 102625848 102616325 102613613 100780669 100802622 100817007 100255658 100245782 7478691 7487584 7467458 11407222 11407221 25487764 101264139 101244421 543627 102587679 102601488 102589259 107831423 107791115 107767882 4325254 4328885 103654735 100274451 103649581 123144460 123069218 123127380 123443142 123406381 8078332 8081417 100845401 100830810 5721686
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