ATTED-II : GeneCoexpression result

Species	Gene	Description
osa-r.6	4338016	sister-chromatid cohesion protein 3
osa-u.5	4338016	sister-chromatid cohesion protein 3
osa-m.8	4338016	sister-chromatid cohesion protein 3
osa-e.1	4338016	sister-chromatid cohesion protein 3
tae-r.2	123176089	sister-chromatid cohesion protein 3
tae-r.2	123096901	sister-chromatid cohesion protein 3
tae-r.2	123085987	sister-chromatid cohesion protein 3
hvu-r.1	123448371	sister-chromatid cohesion protein 3
bdi-r.1	100839138	sister-chromatid cohesion protein 3
zma-u.5	103648187	sister-chromatid cohesion protein 3
sbi-r.1	8082041	sister-chromatid cohesion protein 3
ath-u.5	SCC3	sister-chromatid cohesion protein 3
gma-u.5	100810550	sister-chromatid cohesion protein 3
sly-u.5	101267707	sister-chromatid cohesion protein 3
bra-r.6	103866336	sister-chromatid cohesion protein 3
vvi-u.5	100242474	sister-chromatid cohesion protein 3
ppo-u.5	18105325	sister-chromatid cohesion protein 3-like
ppo-u.5	7466176	sister-chromatid cohesion protein 3
mtr-u.5	25499570	sister-chromatid cohesion protein 3
ghi-r.1	107923927	sister-chromatid cohesion protein 3
ghi-r.1	107912392	sister-chromatid cohesion protein 3
bna-r.1	106394370	sister-chromatid cohesion protein 3
bna-r.1	106450401	sister-chromatid cohesion protein 3-like
sot-r.1	107057860	sister-chromatid cohesion protein 3-like
sot-r.1	102600186	sister-chromatid cohesion protein 3
sot-r.1	102590864	sister-chromatid cohesion protein 3-like
cit-r.1	102621685	sister-chromatid cohesion protein 3
nta-r.1	107787291	sister-chromatid cohesion protein 3
nta-r.1	107813746	sister-chromatid cohesion protein 3-like
cre-r.1	CHLRE_17g736400v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO:0007062 [list] [network] sister chromatid cohesion

(31 genes)

IEA

GO CC

GO:0008278 [list] [network] cohesin complex	(8 genes)	IEA
GO:0000785 [list] [network] chromatin	(200 genes)	IEA
GO:0005634 [list] [network] nucleus	(3003 genes)	IEA

GO MF

GO:0003682 [list] [network] chromatin binding

(130 genes)

IEA

Protein

XP_015640274.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 2, E.R. 2, cysk_nucl 1, E.R._plas 1, chlo 1, plas 1, E.R._vacu 1, cyto_E.R. 1

(predict for XP_015640274.1)

Subcellular
localization
TargetP

mito 5, other 4

(predict for XP_015640274.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-r.6 for 4338016	osa-u.5 for 4338016	osa-m.8 for 4338016	osa-e.1 for 4338016	tae-r.2 for 123176089	tae-r.2 for 123096901	tae-r.2 for 123085987	hvu-r.1 for 123448371	bdi-r.1 for 100839138	zma-u.5 for 103648187	sbi-r.1 for 8082041	ath-u.5 for SCC3	gma-u.5 for 100810550	sly-u.5 for 101267707	bra-r.6 for 103866336	vvi-u.5 for 100242474	ppo-u.5 for 18105325	ppo-u.5 for 7466176	mtr-u.5 for 25499570	ghi-r.1 for 107923927	ghi-r.1 for 107912392	bna-r.1 for 106394370	bna-r.1 for 106450401	sot-r.1 for 107057860	sot-r.1 for 102600186	sot-r.1 for 102590864	cit-r.1 for 102621685	nta-r.1 for 107787291	nta-r.1 for 107813746	cre-r.1 for CHLRE_17g736400v5

Ortholog

Ortholog ID: 8923

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

SCC3

Function^*

sister-chromatid cohesion protein 3

sister-chromatid cohesion protein 3-like

sister-chromatid cohesion protein 3

sister-chromatid cohesion protein 3-like

sister-chromatid cohesion protein 3

sister-chromatid cohesion protein 3-like

sister-chromatid cohesion protein 3

sister-chromatid cohesion protein 3-like

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03083	Polycomb repressive complex	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	3
hvu03250	Viral life cycle - HIV-1	2
hvu03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	3
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03460	Fanconi anemia pathway	2
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04120	Ubiquitin mediated proteolysis	2
ath03013	Nucleocytoplasmic transport	2
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03430	Mismatch repair	3
gma03030	DNA replication	2
gma03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	3
sly03083	Polycomb repressive complex	3
sly03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3
bra03013	Nucleocytoplasmic transport	2
bra03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03440	Homologous recombination	2
vvi03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03030	DNA replication	3
ppo03430	Mismatch repair	3
ppo03460	Fanconi anemia pathway	3
ppo03410	Base excision repair	2
ppo03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03083	Polycomb repressive complex	2
ppo03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	3
ghi03018	RNA degradation	2
ghi04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	3
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03083	Polycomb repressive complex	2
sot03250	Viral life cycle - HIV-1	2
sot03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	2
nta03015	mRNA surveillance pathway	2
nta03013	Nucleocytoplasmic transport	2
nta03040	Spliceosome	2
nta04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	4
nta03015	mRNA surveillance pathway	2
nta03050	Proteasome	2
nta03013	Nucleocytoplasmic transport	2
nta03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

4338016

123176089

123096901

123085987

123448371

100839138

103648187

8082041

819410

100810550

101267707

103866336

100242474

18105325

7466176

25499570

107923927

107912392

106394370

106450401

107057860

102600186

102590864

102621685

107787291

107813746

5725126

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 4338016 (osa-r.6 coexpression data)

Top 50 enrichment test to 4338016 (osa-r.6 coexpression data)


Species	osa	tae	hvu	bdi	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	3	1	1	1	1	1	1	1	1	1	2	1	2	2	3	1	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4338016 (osa-r.6 coexpression data)

Top 50 enrichment test to 4338016 (osa-r.6 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**