ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
osa-u.5	4342135	protein REVEILLE 1
osa-r.6	4342135	protein REVEILLE 1
osa-m.8	4342135	protein REVEILLE 1
osa-e.1	4342135	protein REVEILLE 1
osa-u.5	4330349	protein REVEILLE 1
osa-u.5	4336779	uncharacterized LOC4336779
tae-r.2	123159960	protein LHY
tae-r.2	123046701	protein REVEILLE 7
tae-r.2	123054556	protein REVEILLE 7
hvu-r.1	123427840	protein REVEILLE 1-like
hvu-r.1	123407640	protein LHY-like
hvu-r.1	123401551	protein REVEILLE 1-like
bdi-r.1	100829508	myb-like protein H
bdi-r.1	100837761	protein REVEILLE 2
bdi-r.1	100842816	protein REVEILLE 7-like
zma-u.5	100280442	uncharacterized LOC100280442
zma-u.5	100276850	uncharacterized LOC100276850
zma-u.5	100273616	uncharacterized LOC100273616
sbi-r.1	110431210	uncharacterized LOC110431210
sbi-r.1	8073204	uncharacterized LOC8073204
sbi-r.1	8060442	uncharacterized LOC8060442
ath-u.5	RVE2	Homeodomain-like superfamily protein
ath-u.5	EPR1	Homeodomain-like superfamily protein
ath-u.5	AT3G10113	Homeodomain-like superfamily protein
gma-u.5	100101861	protein REVEILLE 7-like
gma-u.5	100785040	protein REVEILLE 1
gma-u.5	MYB173	MYB transcription factor MYB173
sly-u.5	101261079	protein REVEILLE 1
sly-u.5	101255972	protein REVEILLE 7
bra-r.6	103856239	protein REVEILLE 1
bra-r.6	EPR1	protein REVEILLE 7
bra-r.6	103846255	protein REVEILLE 1
vvi-u.5	100263252	protein REVEILLE 1
ppo-u.5	18106485	protein REVEILLE 1
ppo-u.5	18105607	protein REVEILLE 7
ppo-u.5	7485192	protein REVEILLE 7
mtr-u.5	11427268	protein REVEILLE 1
mtr-u.5	25497345	protein REVEILLE 7
ghi-r.1	107904753	protein REVEILLE 7
ghi-r.1	107926642	protein REVEILLE 2
ghi-r.1	107953319	protein REVEILLE 7
bna-r.1	111202817	protein REVEILLE 1-like
bna-r.1	111211014	protein REVEILLE 1
bna-r.1	111214517	protein REVEILLE 7-like
sot-r.1	102602066	protein REVEILLE 1
cit-r.1	102630458	protein REVEILLE 1
cit-r.1	102614255	protein REVEILLE 7-like
nta-r.1	107774404	protein REVEILLE 1
nta-r.1	107806142	uncharacterized LOC107806142
nta-r.1	107801057	protein REVEILLE 1-like
cre-r.1	CHLRE_06g275350v5	uncharacterized protein

Top 50 coexpressed genes to 4342135 (osa-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 4342135 (osa-u.5 coexpression data)

CoexMap"4342135"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003677 [list] [network] DNA binding

(1843 genes)

IEA

Protein

XP_015644385.1 [sequence] [blastp]
XP_066167612.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10	(predict for XP_015644385.1)
nucl 10	(predict for XP_066167612.1)

Subcellular
localization
TargetP

other 8	(predict for XP_015644385.1)
other 9	(predict for XP_066167612.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-u.5 for 4342135	osa-r.6 for 4342135	osa-m.8 for 4342135	osa-e.1 for 4342135	osa-u.5 for 4330349	osa-u.5 for 4336779	tae-r.2 for 123159960	tae-r.2 for 123046701	tae-r.2 for 123054556	hvu-r.1 for 123427840	hvu-r.1 for 123407640	hvu-r.1 for 123401551	bdi-r.1 for 100829508	bdi-r.1 for 100837761	bdi-r.1 for 100842816	zma-u.5 for 100280442	zma-u.5 for 100276850	zma-u.5 for 100273616	sbi-r.1 for 110431210	sbi-r.1 for 8073204	sbi-r.1 for 8060442	ath-u.5 for RVE2	ath-u.5 for EPR1	ath-u.5 for AT3G10113	gma-u.5 for 100101861	gma-u.5 for 100785040	gma-u.5 for MYB173	sly-u.5 for 101261079	sly-u.5 for 101255972	bra-r.6 for 103856239	bra-r.6 for EPR1	bra-r.6 for 103846255	vvi-u.5 for 100263252	ppo-u.5 for 18106485	ppo-u.5 for 18105607	ppo-u.5 for 7485192	mtr-u.5 for 11427268	mtr-u.5 for 25497345	ghi-r.1 for 107904753	ghi-r.1 for 107926642	ghi-r.1 for 107953319	bna-r.1 for 111202817	bna-r.1 for 111211014	bna-r.1 for 111214517	sot-r.1 for 102602066	cit-r.1 for 102630458	cit-r.1 for 102614255	nta-r.1 for 107774404	nta-r.1 for 107806142	nta-r.1 for 107801057	cre-r.1 for CHLRE_06g275350v5

Ortholog

Ortholog ID: 1576

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

RVE2

EPR1

RVE1

MYB173

MYB177

EPR1

Function^*

protein REVEILLE 1

uncharacterized LOC4336779

protein REVEILLE 7

protein REVEILLE 2

protein REVEILLE 1

protein REVEILLE 1-like

protein LHY-like

protein REVEILLE 1-like

myb-like protein H

protein REVEILLE 2

protein REVEILLE 7-like

uncharacterized LOC100276850

uncharacterized LOC100273483

uncharacterized LOC100279070

uncharacterized LOC110431210

uncharacterized LOC8073204

uncharacterized LOC8060442

Homeodomain-like superfamily protein

MYB transcription factor MYB173

protein REVEILLE 7

MYB transcription factor MYB177

protein REVEILLE 1

protein REVEILLE 7

protein REVEILLE 1

protein REVEILLE 7

protein REVEILLE 1

protein REVEILLE 7

protein REVEILLE 2

protein REVEILLE 7

protein REVEILLE 1-like

protein REVEILLE 1

protein REVEILLE 7-like

uncharacterized LOC107796078

protein REVEILLE 1

uncharacterized LOC107812899

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	4
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04712	Circadian rhythm - plant	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	3
mtr00270	Cysteine and methionine metabolism	2
mtr00330	Arginine and proline metabolism	2
mtr04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00380	Tryptophan metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00860	Porphyrin metabolism	4

Expression

Expression pattern

Entrez Gene ID^*

4342135

4330349

4336779

123046701

123190414

100873110

123427840

123407640

123401551

100829508

100837761

100842816

100276850

100273483

100279070

110431210

8073204

8060442

833700

838413

831595

778058

778089

778060

101261079

101255972

103872597

103846255

103851098

100263252

18106485

18105607

7485192

11427268

25497345

107926642

107953319

121211262

111202817

111211014

106387719

102602066

102630458

102614255

107796078

107784585

107812899

5721757

The preparation time of this page was 0.3 [sec].


Species	osa	tae	hvu	bdi	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	6	3	3	3	3	3	3	3	2	3	1	3	2	3	3	1	2	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4342135 (osa-u.5 coexpression data)

Top 50 enrichment test to 4342135 (osa-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**