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Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.5   4342835   pentatricopeptide repeat-containing protein At3g06920 
 osa-r.6   4342835   pentatricopeptide repeat-containing protein At3g06920 
 osa-m.8   4342835   pentatricopeptide repeat-containing protein At3g06920 
 osa-e.1   4342835   pentatricopeptide repeat-containing protein At3g06920 
 zma-u.5   103633782   pentatricopeptide repeat-containing protein At3g06920 
 ath-u.5   AT3G06920   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5   100812307   pentatricopeptide repeat-containing protein At3g06920 
 sly-u.5   101248045   pentatricopeptide repeat-containing protein At3g06920 
 vvi-u.5   100249392   pentatricopeptide repeat-containing protein At3g06920 
 ppo-u.5   7475916   pentatricopeptide repeat-containing protein At3g06920 
 mtr-u.5   11437374   pentatricopeptide repeat-containing protein At3g06920 

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Top 50 coexpressed genes to 4342835 (osa-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 4342835 (osa-u.5 coexpression data)

CoexMap"4342835"


osaLOC4342835 | Entrez gene ID : 4342835      
Species osa zma ath gma sly vvi ppo mtr sot hvu tae cit sbi ghi cre bna nta bdi bra
Paralog 4 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (4590 genes)  IEA  
Protein XP_015647722.1 [sequence] [blastp]
XP_015647724.1 [sequence] [blastp]
XP_015647725.1 [sequence] [blastp]
XP_015647726.1 [sequence] [blastp]
XP_015647727.1 [sequence] [blastp]
XP_066168655.1 [sequence] [blastp]
XP_066168656.1 [sequence] [blastp]
XP_066168657.1 [sequence] [blastp]
XP_066168658.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  chlo_mito 5,  mito 3,  cyto_mito 1  (predict for XP_015647722.1)
chlo 6,  chlo_mito 5,  mito 3,  cyto_mito 1  (predict for XP_015647724.1)
chlo 6,  chlo_mito 5,  mito 3,  cyto_mito 1  (predict for XP_015647725.1)
chlo 6,  chlo_mito 5,  mito 3,  cyto_mito 1  (predict for XP_015647726.1)
chlo 6,  chlo_mito 5,  mito 3,  cyto_mito 1  (predict for XP_015647727.1)
chlo 6,  chlo_mito 5,  mito 3,  cyto_mito 1  (predict for XP_066168655.1)
chlo 6,  chlo_mito 5,  mito 3,  cyto_mito 1  (predict for XP_066168656.1)
chlo 6,  chlo_mito 5,  mito 3,  cyto_mito 1  (predict for XP_066168657.1)
chlo 6,  chlo_mito 5,  mito 3,  cyto_mito 1  (predict for XP_066168658.1)
Subcellular
localization
TargetP
chlo 6,  mito 5  (predict for XP_015647722.1)
chlo 6,  mito 5  (predict for XP_015647724.1)
chlo 6,  mito 5  (predict for XP_015647725.1)
chlo 6,  mito 5  (predict for XP_015647726.1)
chlo 6,  mito 5  (predict for XP_015647727.1)
chlo 6,  mito 5  (predict for XP_066168655.1)
chlo 6,  mito 5  (predict for XP_066168656.1)
chlo 6,  mito 5  (predict for XP_066168657.1)
chlo 6,  mito 5  (predict for XP_066168658.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.5
for
4342835

.
osa-r.6
for
4342835

.
osa-m.8
for
4342835

.
osa-e.1
for
4342835

.
zma-u.5
for
103633782

.
ath-u.5
for
AT3G06920

.
gma-u.5
for
100812307

.
sly-u.5
for
101248045

.
vvi-u.5
for
100249392

.
ppo-u.5
for
7475916

.
mtr-u.5
for
11437374

.


Ortholog ID: 11288
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi bna sbi sot cit bdi nta nta
Symbol AT3G06920 LOC100812307 LOC101248045 LOC4342835 LOC103633782 LOC103859190 LOC100249392 LOC7475916 LOC11437374 LOC123060995 LOC123069594 LOC123443426 LOC107935101 LOC106388926 LOC8054416 LOC102587317 LOC102616245 LOC100841364 LOC107788065 LOC107806548
Function* Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At3g06920 pentatricopeptide repeat-containing protein At3g06920 pentatricopeptide repeat-containing protein At3g06920 pentatricopeptide repeat-containing protein At3g06920 pentatricopeptide repeat-containing protein At3g06920 pentatricopeptide repeat-containing protein At3g06920 pentatricopeptide repeat-containing protein At3g06920 pentatricopeptide repeat-containing protein At3g06920 pentatricopeptide repeat-containing protein At3g06920 pentatricopeptide repeat-containing protein At3g06920 pentatricopeptide repeat-containing protein At3g06920 pentatricopeptide repeat-containing protein At3g06920 pentatricopeptide repeat-containing protein At3g06920 pentatricopeptide repeat-containing protein At3g06920 pentatricopeptide repeat-containing protein At3g06920 pentatricopeptide repeat-containing protein At3g06920 pentatricopeptide repeat-containing protein At3g06920 uncharacterized LOC107788065 uncharacterized LOC107806548
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
sot03020 RNA polymerase 2
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 2
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 6
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819877 100812307 101248045 4342835 103633782 103859190 100249392 7475916 11437374 123060995 123069594 123443426 107935101 106388926 8054416 102587317 102616245 100841364 107788065 107806548
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