ATTED-II : GeneCoexpression result

Species	Gene	Description
ppo-m.4	7463711	uncharacterized LOC7463711
ppo-u.5	7463711	uncharacterized LOC7463711
ppo-r.4	7463711	uncharacterized LOC7463711
gma-u.5	100527612	uncharacterized LOC100527612
mtr-u.5	25489640	BRISC and BRCA1-A complex member 1
ath-u.5	AT4G32960	BRISC/BRCA1-A complex protein
ath-u.5	AT4G32970	BRISC/BRCA1-A complex protein
bra-r.6	103862208	uncharacterized LOC103862208
vvi-u.5	100260976	uncharacterized LOC100260976
ghi-r.1	107906991	uncharacterized LOC107906991
ghi-r.1	107941871	uncharacterized LOC107941871
bna-r.1	BNAC07G44040D	uncharacterized BNAC07G44040D
bna-r.1	106423403	uncharacterized LOC106423403
cit-r.1	102611871	hypothetical protein
sly-u.5	101267881	uncharacterized LOC101267881
sot-r.1	102596388	uncharacterized LOC102596388
nta-r.1	107824468	uncharacterized LOC107824468
nta-r.1	107779842	uncharacterized LOC107779842
nta-r.1	107779572	uncharacterized LOC107779572
osa-u.5	4340143	uncharacterized LOC4340143
zma-u.5	100193132	uncharacterized LOC100193132
tae-r.2	123167200	uncharacterized LOC123167200
tae-r.2	123151001	uncharacterized LOC123151001
tae-r.2	123088079	uncharacterized LOC123088079
hvu-r.1	123411238	uncharacterized LOC123411238
sbi-r.1	8071322	uncharacterized LOC8071322
bdi-r.1	100846437	uncharacterized LOC100846437
cre-r.1	CHLRE_13g604850v5	uncharacterized protein

Annotation

functional annotation

KEGG

pop03440 [list] [network] Homologous recombination (53 genes)

GO BP

GO:0045739 [list] [network] positive regulation of DNA repair

(2 genes)

IEA

GO CC

GO:0070552 [list] [network] BRISC complex	(4 genes)	IEA
GO:0070531 [list] [network] BRCA1-A complex	(6 genes)	IEA

GO MF

Protein

XP_002324732.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, nucl 3, chlo 1, extr 1, vacu 1

(predict for XP_002324732.1)

Subcellular
localization
TargetP

other 8

(predict for XP_002324732.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-m.4 for 7463711	ppo-u.5 for 7463711	ppo-r.4 for 7463711	gma-u.5 for 100527612	mtr-u.5 for 25489640	ath-u.5 for AT4G32960	ath-u.5 for AT4G32970	bra-r.6 for 103862208	vvi-u.5 for 100260976	ghi-r.1 for 107906991	ghi-r.1 for 107941871	bna-r.1 for BNAC07G44040D	bna-r.1 for 106423403	cit-r.1 for 102611871	sly-u.5 for 101267881	sot-r.1 for 102596388	nta-r.1 for 107824468	nta-r.1 for 107779842	nta-r.1 for 107779572	osa-u.5 for 4340143	zma-u.5 for 100193132	tae-r.2 for 123167200	tae-r.2 for 123151001	tae-r.2 for 123088079	hvu-r.1 for 123411238	sbi-r.1 for 8071322	bdi-r.1 for 100846437	cre-r.1 for CHLRE_13g604850v5

Ortholog

Ortholog ID: 9060

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC7463711

uncharacterized LOC100527612

BRISC and BRCA1-A complex member 1

BRISC/BRCA1-A complex protein

uncharacterized LOC103862208

uncharacterized LOC100260976

uncharacterized LOC107906991

uncharacterized LOC107941871

uncharacterized BNAC07G44040D

uncharacterized LOC106423403

hypothetical protein

uncharacterized LOC101267881

uncharacterized LOC102596388

uncharacterized LOC107824468

uncharacterized LOC107779842

uncharacterized LOC107779572

uncharacterized LOC4340143

uncharacterized LOC100193132

uncharacterized LOC123167200

uncharacterized LOC123151001

uncharacterized LOC123088079

uncharacterized LOC123411238

uncharacterized LOC8071322

uncharacterized LOC100846437

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00240	Pyrimidine metabolism	2
mtr01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04120	Ubiquitin mediated proteolysis	2
vvi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	2
ghi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	2
ghi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03272	Virion - Hepatitis viruses	6
bna04144	Endocytosis	6
bna03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03272	Virion - Hepatitis viruses	6
bna04144	Endocytosis	6
bna03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	4
sly03013	Nucleocytoplasmic transport	2
sly03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	5
sot03420	Nucleotide excision repair	2
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	3
nta03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03440	Homologous recombination	2
nta04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04712	Circadian rhythm - plant	2
nta00920	Sulfur metabolism	2
nta03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00061	Fatty acid biosynthesis	4
tae01212	Fatty acid metabolism	4
tae04120	Ubiquitin mediated proteolysis	3
tae00780	Biotin metabolism	3
tae01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	3
tae03440	Homologous recombination	3
tae04130	SNARE interactions in vesicular transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	3
tae03440	Homologous recombination	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2
sbi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03420	Nucleotide excision repair	2
bdi04141	Protein processing in endoplasmic reticulum	2
bdi03050	Proteasome	2

Expression

Expression pattern

Entrez Gene ID^*

7463711

100527612

25489640

829433

829434

103862208

100260976

107906991

107941871

106406986

106423403

102611871

101267881

102596388

107824468

107779842

107779572

4340143

100193132

123167200

123151001

123088079

123411238

8071322

100846437

5724679

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 7463711 (ppo-m.4 coexpression data)

Top 50 enrichment test to 7463711 (ppo-m.4 coexpression data)


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	1	1	2	1	1	2	2	1	1	1	3	1	1	3	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7463711 (ppo-m.4 coexpression data)

Top 50 enrichment test to 7463711 (ppo-m.4 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**