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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-m.4   7467601   mediator of RNA polymerase II transcription subunit 4 
 ppo-u.5   7467601   mediator of RNA polymerase II transcription subunit 4 
 ppo-r.4   7467601   mediator of RNA polymerase II transcription subunit 4 
 gma-u.5   100812941   mediator of RNA polymerase II transcription subunit 4 
 gma-u.5   100812071   mediator of RNA polymerase II transcription subunit 4 
 gma-u.5   100796958   mediator of RNA polymerase II transcription subunit 4 
 mtr-u.5   11426971   mediator of RNA polymerase II transcription subunit 4 
 mtr-u.5   11438689   mediator of RNA polymerase II transcription subunit 4 
 ath-u.5   AT5G02850   hydroxyproline-rich glycoprotein family protein 
 bra-r.6   103847418   mediator of RNA polymerase II transcription subunit 4 
 vvi-u.5   100249946   mediator of RNA polymerase II transcription subunit 4 
 ghi-r.1   107949715   mediator of RNA polymerase II transcription subunit 4 
 ghi-r.1   107886154   mediator of RNA polymerase II transcription subunit 4 
 bna-r.1   106372609   mediator of RNA polymerase II transcription subunit 4 
 bna-r.1   125579113   mediator of RNA polymerase II transcription subunit 4-like 
 bna-r.1   106450523   mediator of RNA polymerase II transcription subunit 4-like 
 cit-r.1   102619807   mediator of RNA polymerase II transcription subunit 4 
 sly-u.5   101246818   mediator of RNA polymerase II transcription subunit 4 
 sly-u.5   101244543   mediator of RNA polymerase II transcription subunit 4 
 sot-r.1   102580997   mediator of RNA polymerase II transcription subunit 4 
 nta-r.1   107829302   mediator of RNA polymerase II transcription subunit 4-like 
 nta-r.1   107814746   mediator of RNA polymerase II transcription subunit 4-like 
 nta-r.1   107794291   mediator of RNA polymerase II transcription subunit 4 
 osa-u.5   4347726   mediator of RNA polymerase II transcription subunit 4 
 zma-u.5   100277397   Mediator of RNA polymerase II transcription subunit 4 
 tae-r.2   123104622   mediator of RNA polymerase II transcription subunit 4 
 tae-r.2   123112891   mediator of RNA polymerase II transcription subunit 4 
 tae-r.2   123122403   mediator of RNA polymerase II transcription subunit 4 
 hvu-r.1   123400179   mediator of RNA polymerase II transcription subunit 4 
 sbi-r.1   8067287   mediator of RNA polymerase II transcription subunit 4 
 bdi-r.1   100835981   mediator of RNA polymerase II transcription subunit 4 

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Top 50 coexpressed genes to 7467601 (ppo-m.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7467601 (ppo-m.4 coexpression data)

CoexMap"7467601"


ppoLOC7467601 | Entrez gene ID : 7467601    
Species ppo gma mtr ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 3 2 1 1 1 2 3 1 2 1 3 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (481 genes)  IEA  
GO CC
GO:0070847 [list] [network] core mediator complex  (8 genes)  IEA  
GO:0016592 [list] [network] mediator complex  (44 genes)  IEA  
GO MF
GO:0003712 [list] [network] transcription coregulator activity  (154 genes)  IEA  
Protein XP_024443629.1 [sequence] [blastp]
XP_024443630.1 [sequence] [blastp]
XP_024443634.1 [sequence] [blastp]
XP_052304011.1 [sequence] [blastp]
XP_052304012.1 [sequence] [blastp]
XP_052304013.1 [sequence] [blastp]
XP_052304014.1 [sequence] [blastp]
XP_052304015.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 4  (predict for XP_024443629.1)
chlo 6,  nucl 4  (predict for XP_024443630.1)
chlo 6,  nucl 4  (predict for XP_024443634.1)
chlo 6,  nucl 4  (predict for XP_052304011.1)
chlo 6,  nucl 4  (predict for XP_052304012.1)
chlo 6,  nucl 4  (predict for XP_052304013.1)
chlo 6,  nucl 4  (predict for XP_052304014.1)
chlo 6,  nucl 4  (predict for XP_052304015.1)
Subcellular
localization
TargetP
chlo 6  (predict for XP_024443629.1)
chlo 6  (predict for XP_024443630.1)
chlo 6  (predict for XP_024443634.1)
chlo 6  (predict for XP_052304011.1)
chlo 6  (predict for XP_052304012.1)
chlo 6  (predict for XP_052304013.1)
chlo 6  (predict for XP_052304014.1)
chlo 6  (predict for XP_052304015.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-m.4
for
7467601
ppo-u.5
for
7467601
ppo-r.4
for
7467601
gma-u.5
for
100812941
gma-u.5
for
100812071
gma-u.5
for
100796958
mtr-u.5
for
11426971
mtr-u.5
for
11438689
ath-u.5
for
AT5G02850
bra-r.6
for
103847418
vvi-u.5
for
100249946
ghi-r.1
for
107949715
ghi-r.1
for
107886154
bna-r.1
for
106372609
bna-r.1
for
125579113
bna-r.1
for
106450523
cit-r.1
for
102619807
sly-u.5
for
101246818
sly-u.5
for
101244543
sot-r.1
for
102580997
nta-r.1
for
107829302
nta-r.1
for
107814746
nta-r.1
for
107794291
osa-u.5
for
4347726
zma-u.5
for
100277397
tae-r.2
for
123104622
tae-r.2
for
123112891
tae-r.2
for
123122403
hvu-r.1
for
123400179
sbi-r.1
for
8067287
bdi-r.1
for
100835981


Ortholog ID: 7337
Species ppo gma gma gma mtr mtr ath bra vvi ghi ghi bna bna bna cit sly sly sot nta nta nta osa zma tae tae tae hvu sbi bdi
Symbol LOC7467601 LOC100812941 LOC100812071 LOC100796958 LOC11426971 LOC11438689 AT5G02850 LOC103847418 LOC100249946 LOC107949715 LOC107886154 LOC106372609 LOC125579113 LOC106450523 LOC102619807 LOC101246818 LOC101244543 LOC102580997 LOC107829302 LOC107814746 LOC107794291 LOC4347726 LOC100277397 LOC123104622 LOC123112891 LOC123122403 LOC123400179 LOC8067287 LOC100835981
Function* mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4 hydroxyproline-rich glycoprotein family protein mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4-like mediator of RNA polymerase II transcription subunit 4-like mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4-like mediator of RNA polymerase II transcription subunit 4-like mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4 Mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03013 Nucleocytoplasmic transport 3
gma03015 mRNA surveillance pathway 3
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 3
mtr03040 Spliceosome 2
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 3
vvi03015 mRNA surveillance pathway 2
vvi04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03410 Base excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03410 Base excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
sot04382 Cornified envelope formation 2
sot03018 RNA degradation 2
sot03250 Viral life cycle - HIV-1 2
sot03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 6
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03250 Viral life cycle - HIV-1 3
tae03272 Virion - Hepatitis viruses 3
tae04144 Endocytosis 3
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
sbi03050 Proteasome 3
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 5
bdi00270 Cysteine and methionine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 7467601 100812941 100812071 100796958 11426971 11438689 831762 103847418 100249946 107949715 107886154 106372609 125579113 106450523 102619807 101246818 101244543 102580997 107829302 107814746 107794291 4347726 100277397 123104622 123112891 123122403 123400179 8067287 100835981
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