ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-m.4	7468942	squamosa promoter-binding-like protein 9
ppo-u.5	7468942	squamosa promoter-binding-like protein 9
ppo-r.4	7468942	squamosa promoter-binding-like protein 9
ppo-u.5	7460558	squamosa promoter-binding-like protein 16
ppo-u.5	7460811	squamosa promoter-binding-like protein 4
ppo-u.5	7469559	squamosa promoter-binding protein 1
gma-u.5	100800646	squamosa promoter-binding protein 1
gma-u.5	100802206	squamosa promoter-binding-like protein 8
gma-u.5	SPL9D	squamosa promoter-binding-like protein 9d
mtr-u.5	25493121	squamosa promoter-binding-like protein 3
mtr-u.5	25499846	squamosa promoter-binding-like protein 7
ath-u.5	SPL13B	Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
ath-u.5	AT1G69170	Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
ath-u.5	SPL4	squamosa promoter binding protein-like 4
bra-r.6	103844692	squamosa promoter-binding-like protein 8
bra-r.6	103843824	squamosa promoter-binding-like protein 8
bra-r.6	103865930	squamosa promoter-binding-like protein 9
vvi-u.5	100255434	squamosa promoter-binding-like protein 3
vvi-u.5	100243827	squamosa promoter-binding-like protein 16
ghi-r.1	107921105	squamosa promoter-binding-like protein 13A
ghi-r.1	107917040	squamosa promoter-binding protein 1
ghi-r.1	107923989	squamosa promoter-binding-like protein 8
cit-r.1	102618573	squamosa promoter-binding-like protein 3
cit-r.1	102607798	squamosa promoter-binding protein 1-like
cit-r.1	102628358	squamosa promoter-binding-like protein 7
sly-u.5	SPL-CNR	SQUAMOSA promoter binding protein-like
sly-u.5	101267454	squamosa promoter-binding-like protein 8
sly-u.5	101266455	squamosa promoter-binding-like protein 8
sot-r.1	102594116	squamosa promoter-binding-like protein 3
sot-r.1	102591509	squamosa promoter-binding-like protein 8
nta-r.1	107762327	squamosa promoter-binding-like protein 4
nta-r.1	107817110	squamosa promoter-binding-like protein 9
nta-r.1	107817617	squamosa promoter-binding-like protein 9
osa-u.5	4347516	squamosa promoter-binding-like protein 18
osa-u.5	4346133	squamosa promoter-binding-like protein 16
osa-u.5	4345998	squamosa promoter-binding-like protein 14
zma-u.5	ub3	unbranched 3
zma-u.5	sbp29	SBP-transcription factor 29
zma-u.5	sbp21	SBP-transcription factor 21
tae-r.2	123052590	squamosa promoter-binding-like protein 13
hvu-r.1	123399776	squamosa promoter-binding-like protein 18
hvu-r.1	123445251	squamosa promoter-binding-like protein 2
sbi-r.1	8064025	squamosa promoter-binding-like protein 14
sbi-r.1	8080721	squamosa promoter-binding-like protein 13
sbi-r.1	8079806	squamosa promoter-binding-like protein 2
bdi-r.1	100824643	squamosa promoter-binding-like protein 17
bdi-r.1	100823130	squamosa promoter-binding-like protein 7
bdi-r.1	100823377	squamosa promoter-binding-like protein 4
cre-r.1	CHLRE_06g300600v5	uncharacterized protein
cre-r.1	CHLRE_02g104700v5	uncharacterized protein
cre-r.1	CHLRE_07g345050v5	uncharacterized protein

Top 50 coexpressed genes to 7468942 (ppo-m.4 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 7468942 (ppo-m.4 coexpression data)

CoexMap"7468942"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(3662 genes)

IEA

GO MF

GO:0003677 [list] [network] DNA binding

(2205 genes)

IEA

Protein

XP_002322678.3 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10

(predict for XP_002322678.3)

Subcellular
localization
TargetP

other 7, chlo 3

(predict for XP_002322678.3)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-m.4 for 7468942	ppo-u.5 for 7468942	ppo-r.4 for 7468942	ppo-u.5 for 7460558	ppo-u.5 for 7460811	ppo-u.5 for 7469559	gma-u.5 for 100800646	gma-u.5 for 100802206	gma-u.5 for SPL9D	mtr-u.5 for 25493121	mtr-u.5 for 25499846	ath-u.5 for SPL13B	ath-u.5 for AT1G69170	ath-u.5 for SPL4	bra-r.6 for 103844692	bra-r.6 for 103843824	bra-r.6 for 103865930	vvi-u.5 for 100255434	vvi-u.5 for 100243827	ghi-r.1 for 107921105	ghi-r.1 for 107917040	ghi-r.1 for 107923989	cit-r.1 for 102618573	cit-r.1 for 102607798	cit-r.1 for 102628358	sly-u.5 for SPL-CNR	sly-u.5 for 101267454	sly-u.5 for 101266455	sot-r.1 for 102594116	sot-r.1 for 102591509	nta-r.1 for 107762327	nta-r.1 for 107817110	nta-r.1 for 107817617	osa-u.5 for 4347516	osa-u.5 for 4346133	osa-u.5 for 4345998	zma-u.5 for ub3	zma-u.5 for sbp29	zma-u.5 for sbp21	tae-r.2 for 123052590	hvu-r.1 for 123399776	hvu-r.1 for 123445251	sbi-r.1 for 8064025	sbi-r.1 for 8080721	sbi-r.1 for 8079806	bdi-r.1 for 100824643	bdi-r.1 for 100823130	bdi-r.1 for 100823377	cre-r.1 for CHLRE_06g300600v5	cre-r.1 for CHLRE_02g104700v5	cre-r.1 for CHLRE_07g345050v5

Ortholog

Ortholog ID: 89

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

SPL4

SPL-CNR

sbp23

Function^*

squamosa promoter-binding-like protein 3

squamosa promoter-binding-like protein 13A

squamosa promoter-binding-like protein 3

squamosa promoter-binding protein 1-like

squamosa promoter-binding-like protein 3

squamosa promoter-binding protein 1

squamosa promoter-binding-like protein 8

squamosa promoter binding protein-like 4

squamosa promoter-binding-like protein 9

squamosa promoter-binding-like protein 5

promoter-binding protein SPL9

squamosa promoter-binding-like protein 3

squamosa promoter-binding-like protein 8

squamosa promoter-binding-like protein 13A

squamosa promoter-binding-like protein 9

squamosa promoter-binding-like protein 8

squamosa promoter-binding-like protein 7

teosinte glume architecture 1-like

squamosa promoter-binding-like protein 8

SQUAMOSA promoter binding protein-like

squamosa promoter-binding-like protein 8

squamosa promoter-binding-like protein 9

squamosa promoter-binding-like protein 3

squamosa promoter-binding-like protein 8

squamosa promoter-binding protein 1-like

squamosa promoter-binding protein 1

squamosa promoter-binding-like protein 8

squamosa promoter-binding-like protein 16

squamosa promoter-binding-like protein 4

squamosa promoter-binding-like protein 2

SBP-transcription factor 23

squamosa promoter-binding-like protein 17

squamosa promoter-binding-like protein 16

squamosa promoter-binding-like protein 2

squamosa promoter-binding-like protein 17

squamosa promoter-binding-like protein 14

teosinte glume architecture 1

putative squamosa promoter-binding-like protein 19

squamosa promoter-binding-like protein 17

squamosa promoter-binding-like protein 4

squamosa promoter-binding-like protein 8

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	6
ppo00592	alpha-Linolenic acid metabolism	2
ppo04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	4
gma00904	Diterpenoid biosynthesis	2
gma00908	Zeatin biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00510	N-Glycan biosynthesis	2
gma00513	Various types of N-glycan biosynthesis	2
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00073	Cutin, suberine and wax biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04016	MAPK signaling pathway - plant	5
vvi04075	Plant hormone signal transduction	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00230	Purine metabolism	2
ghi00240	Pyrimidine metabolism	2
ghi00760	Nicotinate and nicotinamide metabolism	2
ghi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00030	Pentose phosphate pathway	5
bna01200	Carbon metabolism	5
bna00073	Cutin, suberine and wax biosynthesis	4
bna00270	Cysteine and methionine metabolism	2
bna00062	Fatty acid elongation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00561	Glycerolipid metabolism	2
cit00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00073	Cutin, suberine and wax biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00073	Cutin, suberine and wax biosynthesis	3
nta00511	Other glycan degradation	2
nta04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03030	DNA replication	3
osa00480	Glutathione metabolism	3
osa04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3
sbi03082	ATP-dependent chromatin remodeling	2
sbi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04075	Plant hormone signal transduction	2

Expression

Expression pattern

Entrez Gene ID^*

7456784

7454733

18103048

100789055

100305703

25502503

11431467

841749

103865930

103868453

100253723

100257602

107923989

107924238

107938840

111215130

106370056

102628358

102620002

102616706

101256245

101266455

101250753

102594116

102591509

102581816

107811347

142161672

4346133

4328461

103650833

100217104

123121932

123167761

123445251

123407106

8064025

8060951

8075819

100824643

100823377

100841788

5716977

5725317

5718132

The preparation time of this page was 0.2 [sec].


Species	ppo	gma	mtr	ath	bra	vvi	ghi	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre	bna
Paralog	6	3	2	3	3	2	3	3	3	2	3	3	3	1	2	3	3	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7468942 (ppo-m.4 coexpression data)

Top 50 enrichment test to 7468942 (ppo-m.4 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**