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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-m.4   7469147   uncharacterized LOC7469147 
 ppo-u.5   7469147   uncharacterized LOC7469147 
 ppo-r.4   7469147   uncharacterized LOC7469147 
 ppo-u.5   7463163   uncharacterized LOC7463163 
 gma-u.5   100784738   DNA ligase 1 
 gma-u.5   100784437   nucleolin 
 mtr-u.5   11411392   glutamic acid-rich protein 
 ath-u.5   AT4G08310   DNA ligase 
 ath-u.5   AT1G44780   translation initiation factor 
 bra-r.6   103847732   glutamic acid-rich protein 
 vvi-u.5   100259114   uncharacterized LOC100259114 
 ghi-r.1   107905006   DNA ligase 1 
 ghi-r.1   107901406   neurofilament medium polypeptide 
 ghi-r.1   107962506   DNA ligase 1 
 bna-r.1   106350694   topoisomerase 1-associated factor 1 
 bna-r.1   106397025   retrotransposon-like protein 1 
 cit-r.1   102624672   uncharacterized LOC102624672 
 sly-u.5   101246887   suppressor protein SRP40-like 
 sot-r.1   102592354   glutamic acid-rich protein 
 nta-r.1   107789159   uncharacterized LOC107789159 
 nta-r.1   107779372   uncharacterized LOC107779372 
 osa-u.5   4350684   uncharacterized LOC4350684 
 zma-u.5   100278623   uncharacterized LOC100278623 
 tae-r.2   123092057   protein IWS1 homolog A 
 tae-r.2   123097405   protein IWS1 homolog A 
 tae-r.2   123086103   glutamic acid-rich protein 
 hvu-r.1   123448434   triadin-like 
 sbi-r.1   8066049   DNA ligase 1 
 bdi-r.1   100823815   HIRA-interacting protein 3 
 cre-r.1   CHLRE_12g539750v5   uncharacterized protein 

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Top 50 coexpressed genes to 7469147 (ppo-m.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7469147 (ppo-m.4 coexpression data)

CoexMap"7469147"


ppoLOC7469147 | Entrez gene ID : 7469147    
Species ppo gma mtr ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 1 2 1 1 3 2 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (3662 genes)  IEA  
GO MF
Protein XP_002307428.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_002307428.2)
Subcellular
localization
TargetP
other 9  (predict for XP_002307428.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-m.4
for
7469147
ppo-u.5
for
7469147
ppo-r.4
for
7469147
ppo-u.5
for
7463163
gma-u.5
for
100784738
gma-u.5
for
100784437
mtr-u.5
for
11411392
ath-u.5
for
AT4G08310
ath-u.5
for
AT1G44780
bra-r.6
for
103847732
vvi-u.5
for
100259114
ghi-r.1
for
107905006
ghi-r.1
for
107901406
ghi-r.1
for
107962506
bna-r.1
for
106350694
bna-r.1
for
106397025
cit-r.1
for
102624672
sly-u.5
for
101246887
sot-r.1
for
102592354
nta-r.1
for
107789159
nta-r.1
for
107779372
osa-u.5
for
4350684
zma-u.5
for
100278623
tae-r.2
for
123092057
tae-r.2
for
123097405
tae-r.2
for
123086103
hvu-r.1
for
123448434
sbi-r.1
for
8066049
bdi-r.1
for
100823815
cre-r.1
for
CHLRE_12g539750v5


Ortholog ID: 8071
Species ppo ppo gma gma mtr ath ath bra vvi ghi ghi ghi bna bna cit sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC7469147 LOC7463163 LOC100784738 LOC100784437 LOC11411392 AT4G08310 AT1G44780 LOC103847732 LOC100259114 LOC107901406 LOC107962506 LOC107923933 LOC106350694 LOC106397025 LOC102624672 LOC101246887 LOC102592354 LOC107789159 LOC107779372 LOC4350684 LOC100278623 LOC123092057 LOC123097405 LOC123086103 LOC123448434 LOC8066049 LOC100823815 CHLRE_12g539750v5
Function* uncharacterized LOC7469147 uncharacterized LOC7463163 DNA ligase 1 nucleolin glutamic acid-rich protein DNA ligase translation initiation factor glutamic acid-rich protein uncharacterized LOC100259114 neurofilament medium polypeptide DNA ligase 1 DNA ligase 1 topoisomerase 1-associated factor 1 retrotransposon-like protein 1 uncharacterized LOC102624672 suppressor protein SRP40-like glutamic acid-rich protein uncharacterized LOC107789159 uncharacterized LOC107779372 uncharacterized LOC4350684 uncharacterized LOC100278623 protein IWS1 homolog A protein IWS1 homolog A glutamic acid-rich protein triadin-like DNA ligase 1 HIRA-interacting protein 3 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03440 Homologous recombination 2
ghi03450 Non-homologous end-joining 2
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03440 Homologous recombination 2
ghi03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna04517 IgSF CAM signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04517 IgSF CAM signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03022 Basal transcription factors 2
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04517 IgSF CAM signaling 3
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 3
hvu00780 Biotin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 2
bdi03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 7469147 7463163 100784738 100784437 11411392 826385 841042 103847732 100259114 107901406 107962506 107923933 106350694 106397025 102624672 101246887 102592354 107789159 107779372 4350684 100278623 123092057 123097405 123086103 123448434 8066049 100823815 66055713
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