ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-m.4	7475962	sucrose nonfermenting 4-like protein
ppo-u.5	7475962	sucrose nonfermenting 4-like protein
ppo-r.4	7475962	sucrose nonfermenting 4-like protein
ppo-u.5	7481751	sucrose nonfermenting 4-like protein
ppo-u.5	18101838	sucrose nonfermenting 4-like protein
ppo-u.5	18098699	sucrose nonfermenting 4-like protein
gma-u.5	100790062	sucrose nonfermenting 4-like protein
gma-u.5	100815681	sucrose nonfermenting 4-like protein
gma-u.5	100814655	sucrose nonfermenting 4-like protein
mtr-u.5	11422279	sucrose nonfermenting 4-like protein
mtr-u.5	11434177	sucrose nonfermenting 4-like protein
ath-u.5	SNF4	sucrose nonfermenting-like protein
bra-r.6	103871638	sucrose nonfermenting 4-like protein
bra-r.6	103836362	sucrose nonfermenting 4-like protein
bra-r.6	103843364	sucrose nonfermenting 4-like protein
vvi-u.5	100240823	sucrose nonfermenting 4-like protein
vvi-u.5	100252910	sucrose nonfermenting 4-like protein
ghi-r.1	107896709	sucrose nonfermenting 4-like protein
ghi-r.1	107899097	sucrose nonfermenting 4-like protein
ghi-r.1	107908419	sucrose nonfermenting 4-like protein
bna-r.1	106346293	sucrose nonfermenting 4-like protein
bna-r.1	106415260	sucrose nonfermenting 4-like protein
bna-r.1	106453176	sucrose nonfermenting 4-like protein
cit-r.1	102626355	sucrose nonfermenting 4-like protein
cit-r.1	102623319	sucrose nonfermenting 4-like protein
sly-u.5	101245800	sucrose nonfermenting 4-like protein
sly-u.5	101267445	sucrose nonfermenting 4-like protein
sot-r.1	102594181	sucrose nonfermenting 4-like protein
sot-r.1	102593769	sucrose nonfermenting 4-like protein
nta-r.1	107805465	sucrose nonfermenting 4-like protein
nta-r.1	107784061	sucrose nonfermenting 4-like protein
nta-r.1	107779994	sucrose nonfermenting 4-like protein
osa-u.5	4334839	sucrose nonfermenting 4-like protein
zma-u.5	542544	protein kinase AKINbetagamma-2
zma-u.5	541867	AKINbetagamma-1 protein kinase
tae-r.2	123114442	sucrose nonfermenting 4-like protein
tae-r.2	123087494	sucrose nonfermenting 4-like protein
tae-r.2	123123938	sucrose nonfermenting 4-like protein
hvu-r.1	123395209	sucrose nonfermenting 4-like protein
sbi-r.1	8061380	sucrose nonfermenting 4-like protein
bdi-r.1	100835781	sucrose nonfermenting 4-like protein
cre-r.1	CHLRE_12g484350v5	uncharacterized protein

Top 50 coexpressed genes to 7475962 (ppo-m.4 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 7475962 (ppo-m.4 coexpression data)

CoexMap"7475962"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_024466899.2 [sequence] [blastp]

Subcellular
localization
wolf

cyto 3, nucl 2, cyto_E.R. 2, vacu 1, E.R. 1, E.R._vacu 1, cyto_pero 1, cyto_plas 1

(predict for XP_024466899.2)

Subcellular
localization
TargetP

mito 5, other 5

(predict for XP_024466899.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-m.4 for 7475962	ppo-u.5 for 7475962	ppo-r.4 for 7475962	ppo-u.5 for 7481751	ppo-u.5 for 18101838	ppo-u.5 for 18098699	gma-u.5 for 100790062	gma-u.5 for 100815681	gma-u.5 for 100814655	mtr-u.5 for 11422279	mtr-u.5 for 11434177	ath-u.5 for SNF4	bra-r.6 for 103871638	bra-r.6 for 103836362	bra-r.6 for 103843364	vvi-u.5 for 100240823	vvi-u.5 for 100252910	ghi-r.1 for 107896709	ghi-r.1 for 107899097	ghi-r.1 for 107908419	bna-r.1 for 106346293	bna-r.1 for 106415260	bna-r.1 for 106453176	cit-r.1 for 102626355	cit-r.1 for 102623319	sly-u.5 for 101245800	sly-u.5 for 101267445	sot-r.1 for 102594181	sot-r.1 for 102593769	nta-r.1 for 107805465	nta-r.1 for 107784061	nta-r.1 for 107779994	osa-u.5 for 4334839	zma-u.5 for 542544	zma-u.5 for 541867	tae-r.2 for 123114442	tae-r.2 for 123087494	tae-r.2 for 123123938	hvu-r.1 for 123395209	sbi-r.1 for 8061380	bdi-r.1 for 100835781	cre-r.1 for CHLRE_12g484350v5

Ortholog

Ortholog ID: 2516

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

SNF4

Function^*

sucrose nonfermenting 4-like protein

sucrose nonfermenting-like protein

sucrose nonfermenting 4-like protein

protein kinase AKINbetagamma-2

AKINbetagamma-1 protein kinase

sucrose nonfermenting 4-like protein

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03083	Polycomb repressive complex	4
ppo00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03083	Polycomb repressive complex	3
ppo03013	Nucleocytoplasmic transport	2
ppo03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00562	Inositol phosphate metabolism	2
ppo04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04148	Efferocytosis	5
gma03013	Nucleocytoplasmic transport	2
gma04120	Ubiquitin mediated proteolysis	2
gma03015	mRNA surveillance pathway	2
gma03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01200	Carbon metabolism	4
mtr01230	Biosynthesis of amino acids	2
mtr00500	Starch and sucrose metabolism	2
mtr00020	Citrate cycle (TCA cycle)	2
mtr01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00770	Pantothenate and CoA biosynthesis	4
mtr01240	Biosynthesis of cofactors	2
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	2
ath03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	2
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	3
bra04382	Cornified envelope formation	3
bra01200	Carbon metabolism	2
bra00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	2
vvi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00564	Glycerophospholipid metabolism	2
ghi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	2
bna04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	4
sly04144	Endocytosis	4
sly03250	Viral life cycle - HIV-1	2
sly03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	3
sot04382	Cornified envelope formation	3
sot04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	3
sot04142	Lysosome	3
sot04144	Endocytosis	3
sot04075	Plant hormone signal transduction	2
sot04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	2
nta04382	Cornified envelope formation	2
nta03460	Fanconi anemia pathway	2
nta00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03460	Fanconi anemia pathway	2
nta04136	Autophagy - other	2
nta00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	3
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03022	Basal transcription factors	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	4
tae03022	Basal transcription factors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	4
tae03022	Basal transcription factors	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04142	Lysosome	2
hvu04144	Endocytosis	2
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04142	Lysosome	2
sbi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03015	mRNA surveillance pathway	2

Expression

Expression pattern

Entrez Gene ID^*

7481751

18101838

18098699

100790062

100814655

100785692

11422279

25481000

837423

103871638

103836362

103843364

100240823

100252910

107908419

107916062

107930930

106346293

106415260

106377009

102626355

102623319

101245800

101267445

102594181

102593769

107805465

107784061

107779994

4334839

542544

541867

123114442

123087494

123123938

123395209

8061380

100835781

5728731

The preparation time of this page was 0.2 [sec].


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	6	3	2	1	3	2	3	3	2	2	2	3	1	2	3	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7475962 (ppo-m.4 coexpression data)

Top 50 enrichment test to 7475962 (ppo-m.4 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**