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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-m.4   7483629   DNA mismatch repair protein MSH5 
 ppo-u.5   7483629   DNA mismatch repair protein MSH5 
 ppo-r.4   7483629   DNA mismatch repair protein MSH5 
 gma-u.5   100797567   DNA mismatch repair protein MSH5-like 
 gma-u.5   100794332   DNA mismatch repair protein MSH5 
 vvi-u.5   100252044   DNA mismatch repair protein MSH5 
 sly-u.5   101243646   DNA mismatch repair protein MSH5 
 sot-r.1   102603553   DNA mismatch repair protein MSH5 
 nta-r.1   107763815   DNA mismatch repair protein MSH5 
 nta-r.1   107802701   DNA mismatch repair protein MSH5-like 
 osa-u.5   4339215   DNA mismatch repair protein MSH5-like 
 zma-u.5   103635819   DNA mismatch repair protein MSH5 
 zma-u.5   100217093   uncharacterized LOC100217093 
 tae-r.2   123061193   DNA mismatch repair protein MSH5 
 tae-r.2   123182494   DNA mismatch repair protein MSH5 
 hvu-r.1   123443600   DNA mismatch repair protein MSH5 
 sbi-r.1   8067462   DNA mismatch repair protein MSH5 
 bdi-r.1   100831648   DNA mismatch repair protein MSH5 
 cre-r.1   CHLRE_17g713650v5   uncharacterized protein 

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Top 50 coexpressed genes to 7483629 (ppo-m.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7483629 (ppo-m.4 coexpression data)

CoexMap"7483629"


ppoLOC7483629 | Entrez gene ID : 7483629    
Species ppo gma vvi sly sot nta osa zma tae hvu sbi bdi cre bra ath mtr bna ghi cit
Paralog 3 2 1 1 1 2 1 2 2 1 1 1 1 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0051026 [list] [network] chiasma assembly  (3 genes)  IEA  
GO:0006298 [list] [network] mismatch repair  (21 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (3662 genes)  IEA  
GO MF
GO:0030983 [list] [network] mismatched DNA binding  (16 genes)  IEA  
GO:0140664 [list] [network] ATP-dependent DNA damage sensor activity  (25 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2559 genes)  IEA  
Protein XP_024467350.2 [sequence] [blastp]
XP_024467351.2 [sequence] [blastp]
XP_024467352.2 [sequence] [blastp]
XP_024467354.2 [sequence] [blastp]
XP_024467355.2 [sequence] [blastp]
XP_024467356.2 [sequence] [blastp]
XP_024467357.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  E.R. 2,  nucl 1,  plas 1,  vacu 1,  nucl_plas 1  (predict for XP_024467350.2)
cyto 4,  E.R. 2,  nucl 1,  plas 1,  vacu 1,  nucl_plas 1  (predict for XP_024467351.2)
cyto 3,  nucl 2,  E.R. 2,  cyto_plas 2  (predict for XP_024467352.2)
cyto 4,  chlo 2,  cyto_pero 2,  plas 1,  chlo_mito 1  (predict for XP_024467354.2)
cyto 4,  chlo 2,  cyto_pero 2,  plas 1,  chlo_mito 1  (predict for XP_024467355.2)
cyto 4,  chlo 2,  cyto_pero 2,  plas 1,  chlo_mito 1  (predict for XP_024467356.2)
cyto 4,  E.R. 3,  chlo 1,  nucl 1,  mito 1,  plas 1,  vacu 1,  chlo_mito 1,  nucl_plas 1,  mito_plas 1  (predict for XP_024467357.2)
Subcellular
localization
TargetP
other 8  (predict for XP_024467350.2)
other 8  (predict for XP_024467351.2)
other 8  (predict for XP_024467352.2)
scret 5  (predict for XP_024467354.2)
scret 5  (predict for XP_024467355.2)
scret 5  (predict for XP_024467356.2)
other 7  (predict for XP_024467357.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-m.4
for
7483629
ppo-u.5
for
7483629
ppo-r.4
for
7483629
gma-u.5
for
100797567
gma-u.5
for
100794332
vvi-u.5
for
100252044
sly-u.5
for
101243646
sot-r.1
for
102603553
nta-r.1
for
107763815
nta-r.1
for
107802701
osa-u.5
for
4339215
zma-u.5
for
103635819
zma-u.5
for
100217093
tae-r.2
for
123061193
tae-r.2
for
123182494
hvu-r.1
for
123443600
sbi-r.1
for
8067462
bdi-r.1
for
100831648
cre-r.1
for
CHLRE_17g713650v5


Ortholog ID: 8952
Species ppo gma gma vvi sly sot nta nta osa zma zma tae tae hvu sbi bdi cre
Symbol LOC7483629 LOC100797567 LOC100794332 LOC100252044 LOC101243646 LOC102603553 LOC107763815 LOC107802701 LOC4339215 LOC103635819 LOC100217093 LOC123061193 LOC123182494 LOC123443600 LOC8067462 LOC100831648 CHLRE_17g713650v5
Function* DNA mismatch repair protein MSH5 DNA mismatch repair protein MSH5-like DNA mismatch repair protein MSH5 DNA mismatch repair protein MSH5 DNA mismatch repair protein MSH5 DNA mismatch repair protein MSH5 DNA mismatch repair protein MSH5 DNA mismatch repair protein MSH5-like DNA mismatch repair protein MSH5-like DNA mismatch repair protein MSH5 uncharacterized LOC100217093 DNA mismatch repair protein MSH5 DNA mismatch repair protein MSH5 DNA mismatch repair protein MSH5 DNA mismatch repair protein MSH5 DNA mismatch repair protein MSH5 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00562 Inositol phosphate metabolism 2
gma04070 Phosphatidylinositol signaling system 2
gma03015 mRNA surveillance pathway 2
gma00062 Fatty acid elongation 2
gma01040 Biosynthesis of unsaturated fatty acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 4
nta03460 Fanconi anemia pathway 2
nta04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00280 Valine, leucine and isoleucine degradation 2
nta00410 beta-Alanine metabolism 2
nta00562 Inositol phosphate metabolism 2
nta00640 Propanoate metabolism 2
nta01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 7483629 100797567 100794332 100252044 101243646 102603553 107763815 107802701 4339215 103635819 100217093 123061193 123182494 123443600 8067462 100831648 5726009
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