ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-m.4	7488012	auxin transporter-like protein 1
ppo-u.5	7488012	auxin transporter-like protein 1
ppo-r.4	7488012	auxin transporter-like protein 1
ppo-u.5	7466059	auxin transporter-like protein 2
ppo-u.5	7470387	auxin transporter-like protein 5
ppo-u.5	7472133	auxin transporter-like protein 5
gma-u.5	LAX7	auxin transporter-like protein 7
gma-u.5	LAX15	auxin transporter-like protein 15
gma-u.5	LAX9	auxin transporter-like protein 9
mtr-u.5	11406709	auxin transporter-like protein 1
mtr-u.5	11411395	auxin transporter-like protein 3
mtr-u.5	11407085	auxin transporter-like protein 2
ath-u.5	LAX2	uncharacterized protein
ath-u.5	AUX1	Transmembrane amino acid transporter family protein
ath-u.5	LAX1	uncharacterized protein
bra-r.6	AUX1	auxin transporter protein 1
bra-r.6	103858403	auxin transporter-like protein 2
vvi-u.5	100267240	auxin transporter-like protein 2
vvi-u.5	100233126	auxin transporter-like protein 2
vvi-u.5	100243769	auxin transporter-like protein 3
ghi-r.1	107890973	auxin transporter-like protein 2
ghi-r.1	107891563	auxin transporter-like protein 2
ghi-r.1	107899523	auxin transporter-like protein 2
bna-r.1	125604156	auxin transporter-like protein 3
bna-r.1	106435878	auxin transporter-like protein 1
bna-r.1	106429411	auxin transporter-like protein 2
cit-r.1	102616273	auxin transporter-like protein 3
cit-r.1	102613492	auxin transporter-like protein 2
cit-r.1	102611910	auxin transporter-like protein 5
sly-u.5	LAX5	auxin transporter-like protein 5
sly-u.5	LAX1	auxin transporter-like protein 1
sly-u.5	LAX3	auxin transporter-like protein 3
sot-r.1	102587153	auxin transporter-like protein 2
sot-r.1	102584729	auxin transporter-like protein 3
sot-r.1	102586608	auxin transporter-like protein 4
nta-r.1	107818122	auxin transporter-like protein 2
nta-r.1	107816434	auxin transporter-like protein 2
nta-r.1	107810165	auxin transporter-like protein 2
osa-u.5	4349885	putative auxin transporter-like protein 4
osa-u.5	4348107	auxin transporter-like protein 3
osa-u.5	4338948	auxin transporter-like protein 2
zma-u.5	103654551	auxin transporter-like protein 3
zma-u.5	100285200	uncharacterized LOC100285200
zma-u.5	100284071	uncharacterized LOC100284071
tae-r.2	123058218	auxin transporter-like protein 2
tae-r.2	123071464	auxin transporter-like protein 1
tae-r.2	123085185	auxin transporter-like protein 2
hvu-r.1	123449170	auxin transporter-like protein 2
hvu-r.1	123446182	putative auxin transporter-like protein 4
hvu-r.1	123445956	auxin transporter-like protein 2
sbi-r.1	8072513	auxin transporter-like protein 2
sbi-r.1	8070688	auxin transporter-like protein 3
sbi-r.1	8054354	auxin transporter-like protein 2
bdi-r.1	100840134	auxin transporter-like protein 3
bdi-r.1	100835087	auxin transporter-like protein 1
bdi-r.1	100821781	auxin transporter-like protein 3

Top 50 coexpressed genes to 7488012 (ppo-m.4 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 7488012 (ppo-m.4 coexpression data)

CoexMap"7488012"

[Cytoscape]

Annotation

functional annotation

KEGG

pop04075 [list] [network] Plant hormone signal transduction (517 genes)

GO BP

GO CC

GO:0005886 [list] [network] plasma membrane

(1125 genes)

IEA

GO MF

Protein

XP_002311208.1 [sequence] [blastp]
XP_024462152.1 [sequence] [blastp]
XP_024462153.1 [sequence] [blastp]
XP_052311520.1 [sequence] [blastp]
XP_052311521.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 4, E.R. 3, chlo 2, nucl_plas 2, cyto_plas 2	(predict for XP_002311208.1)
plas 4, E.R. 3, chlo 2, nucl_plas 2, cyto_plas 2	(predict for XP_024462152.1)
plas 4, E.R. 3, chlo 2, nucl_plas 2, cyto_plas 2	(predict for XP_024462153.1)
plas 4, E.R. 3, chlo 2, nucl_plas 2, cyto_plas 2	(predict for XP_052311520.1)
plas 4, E.R. 3, chlo 2, nucl_plas 2, cyto_plas 2	(predict for XP_052311521.1)

Subcellular
localization
TargetP

other 9	(predict for XP_002311208.1)
other 9	(predict for XP_024462152.1)
other 9	(predict for XP_024462153.1)
other 9	(predict for XP_052311520.1)
other 9	(predict for XP_052311521.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-m.4 for 7488012	ppo-u.5 for 7488012	ppo-r.4 for 7488012	ppo-u.5 for 7466059	ppo-u.5 for 7470387	ppo-u.5 for 7472133	gma-u.5 for LAX7	gma-u.5 for LAX15	gma-u.5 for LAX9	mtr-u.5 for 11406709	mtr-u.5 for 11411395	mtr-u.5 for 11407085	ath-u.5 for LAX2	ath-u.5 for AUX1	ath-u.5 for LAX1	bra-r.6 for AUX1	bra-r.6 for 103858403	vvi-u.5 for 100267240	vvi-u.5 for 100233126	vvi-u.5 for 100243769	ghi-r.1 for 107890973	ghi-r.1 for 107891563	ghi-r.1 for 107899523	bna-r.1 for 125604156	bna-r.1 for 106435878	bna-r.1 for 106429411	cit-r.1 for 102616273	cit-r.1 for 102613492	cit-r.1 for 102611910	sly-u.5 for LAX5	sly-u.5 for LAX1	sly-u.5 for LAX3	sot-r.1 for 102587153	sot-r.1 for 102584729	sot-r.1 for 102586608	nta-r.1 for 107818122	nta-r.1 for 107816434	nta-r.1 for 107810165	osa-u.5 for 4349885	osa-u.5 for 4348107	osa-u.5 for 4338948	zma-u.5 for 103654551	zma-u.5 for 100285200	zma-u.5 for 100284071	tae-r.2 for 123058218	tae-r.2 for 123071464	tae-r.2 for 123085185	hvu-r.1 for 123449170	hvu-r.1 for 123446182	hvu-r.1 for 123445956	sbi-r.1 for 8072513	sbi-r.1 for 8070688	sbi-r.1 for 8054354	bdi-r.1 for 100840134	bdi-r.1 for 100835087	bdi-r.1 for 100821781

Ortholog

Ortholog ID: 424

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

LOC7488012

LOC7472133

LOC7490334

LAX15

LAX1

LAX2

LOC11406709

LOC25492791

LOC25494399

LAX2

LAX1

LAX3

AUX1

LAX5

LAX1

LAX2

Function^*

auxin transporter-like protein 1

auxin transporter-like protein 5