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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-m.4   7488960   uncharacterized LOC7488960 
 ppo-u.5   7488960   uncharacterized LOC7488960 
 ppo-r.4   7488960   uncharacterized LOC7488960 
 gma-u.5   100791549   U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein 
 gma-u.5   100804021   U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein 
 mtr-u.5   11443782   U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein 
 ath-u.5   AT5G57370   U4/U6.U5 small nuclear ribonucleoprotein 
 bra-r.6   117132192   U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein 
 bra-r.6   103851714   U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein 
 bra-r.6   103845179   U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein 
 vvi-u.5   100261636   uncharacterized LOC100261636 
 ghi-r.1   107941638   U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein 
 ghi-r.1   107926996   U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein 
 bna-r.1   106452561   U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein 
 bna-r.1   106397185   U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein 
 bna-r.1   106389022   U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like 
 cit-r.1   102612655   uncharacterized LOC102612655 
 sly-u.5   101265655   uncharacterized LOC101265655 
 sot-r.1   102579511   U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein 
 nta-r.1   107775019   uncharacterized LOC107775019 
 nta-r.1   107762655   uncharacterized LOC107762655 
 osa-u.5   4329300   uncharacterized LOC4329300 
 zma-u.5   100283326   splicing factor, arginine/serine-rich 7 
 tae-r.2   123138992   U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein 
 tae-r.2   123128729   U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein 
 tae-r.2   123145861   U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein 
 hvu-r.1   123401209   U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein 
 sbi-r.1   8061556   U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein 
 bdi-r.1   100845591   U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein 
 cre-r.1   CHLRE_10g465950v5   uncharacterized protein 

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Top 50 coexpressed genes to 7488960 (ppo-m.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7488960 (ppo-m.4 coexpression data)

CoexMap"7488960"


ppoLOC7488960 | Entrez gene ID : 7488960    
Species ppo gma mtr ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 2 1 1 3 1 2 3 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03040 [list] [network] Spliceosome (338 genes)
GO BP
GO:0008380 [list] [network] RNA splicing  (245 genes)  IEA  
GO CC
GO:0071011 [list] [network] precatalytic spliceosome  (56 genes)  IEA  
GO MF
Protein XP_002324468.1 [sequence] [blastp]
XP_024445323.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto 1,  extr 1  (predict for XP_002324468.1)
nucl 9,  cyto 1,  extr 1  (predict for XP_024445323.1)
Subcellular
localization
TargetP
other 8  (predict for XP_002324468.1)
other 8  (predict for XP_024445323.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-m.4
for
7488960
ppo-u.5
for
7488960
ppo-r.4
for
7488960
gma-u.5
for
100791549
gma-u.5
for
100804021
mtr-u.5
for
11443782
ath-u.5
for
AT5G57370
bra-r.6
for
117132192
bra-r.6
for
103851714
bra-r.6
for
103845179
vvi-u.5
for
100261636
ghi-r.1
for
107941638
ghi-r.1
for
107926996
bna-r.1
for
106452561
bna-r.1
for
106397185
bna-r.1
for
106389022
cit-r.1
for
102612655
sly-u.5
for
101265655
sot-r.1
for
102579511
nta-r.1
for
107775019
nta-r.1
for
107762655
osa-u.5
for
4329300
zma-u.5
for
100283326
tae-r.2
for
123138992
tae-r.2
for
123128729
tae-r.2
for
123145861
hvu-r.1
for
123401209
sbi-r.1
for
8061556
bdi-r.1
for
100845591
cre-r.1
for
CHLRE_10g465950v5


Ortholog ID: 7764
Species ppo gma gma mtr ath bra bra bra vvi ghi ghi bna bna bna cit sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC7488960 LOC100791549 LOC100804021 LOC11443782 AT5G57370 LOC117132192 LOC103851714 LOC103845179 LOC100261636 LOC107941638 LOC107926996 LOC106452561 LOC106397185 LOC106389022 LOC102612655 LOC101265655 LOC102579511 LOC107775019 LOC107762655 LOC4329300 LOC100283326 LOC123138992 LOC123128729 LOC123145861 LOC123401209 LOC8061556 LOC100845591 CHLRE_10g465950v5
Function* uncharacterized LOC7488960 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein U4/U6.U5 small nuclear ribonucleoprotein U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein uncharacterized LOC100261636 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like uncharacterized LOC102612655 uncharacterized LOC101265655 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein uncharacterized LOC107775019 uncharacterized LOC107762655 uncharacterized LOC4329300 splicing factor, arginine/serine-rich 7 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 6
ppo03040 Spliceosome 3
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 7
gma03013 Nucleocytoplasmic transport 3
gma03015 mRNA surveillance pathway 3
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 3
mtr03082 ATP-dependent chromatin remodeling 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 14
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 15
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 9
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi00220 Arginine biosynthesis 3
ghi01210 2-Oxocarboxylic acid metabolism 3
ghi01230 Biosynthesis of amino acids 3
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi00220 Arginine biosynthesis 3
ghi01210 2-Oxocarboxylic acid metabolism 3
ghi01230 Biosynthesis of amino acids 3
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04141 Protein processing in endoplasmic reticulum 4
cre03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 7488960 100791549 100804021 11443782 835843 117132192 103851714 103845179 100261636 107941638 107926996 106452561 106397185 106389022 102612655 101265655 102579511 107775019 107762655 4329300 100283326 123138992 123128729 123145861 123401209 8061556 100845591 66055192
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