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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-m.4   7491724   uncharacterized LOC7491724 
 ppo-u.5   7491724   uncharacterized LOC7491724 
 ppo-r.4   7491724   uncharacterized LOC7491724 
 ppo-u.5   18106822   polyadenylation and cleavage factor homolog 1 
 ath-u.5   AT5G43620   Pre-mRNA cleavage complex II 
 ath-u.5   AT1G66500   Pre-mRNA cleavage complex II 
 bra-r.6   103831110   polyadenylation and cleavage factor homolog 1 
 bna-r.1   106348573   polyadenylation and cleavage factor homolog 5-like 
 bna-r.1   106353885   polyadenylation and cleavage factor homolog 1-like 

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Top 50 coexpressed genes to 7491724 (ppo-m.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7491724 (ppo-m.4 coexpression data)

CoexMap"7491724"


ppoLOC7491724 | Entrez gene ID : 7491724    
Species ppo ath bra bna cre vvi nta mtr hvu tae bdi osa gma zma cit sly ghi sot sbi
Paralog 4 2 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03015 [list] [network] mRNA surveillance pathway (164 genes)
GO BP
GO:0006369 [list] [network] termination of RNA polymerase II transcription  (7 genes)  IEA  
GO CC
GO:0005849 [list] [network] mRNA cleavage factor complex  (18 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (6111 genes)  IEA  
GO MF
GO:0000993 [list] [network] RNA polymerase II complex binding  (23 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (348 genes)  IEA  
Protein XP_052310268.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_052310268.1)
Subcellular
localization
TargetP
other 9  (predict for XP_052310268.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-m.4
for
7491724
ppo-u.5
for
7491724
ppo-r.4
for
7491724
ppo-u.5
for
18106822
ath-u.5
for
AT5G43620
ath-u.5
for
AT1G66500
bra-r.6
for
103831110
bna-r.1
for
106348573
bna-r.1
for
106353885


Ortholog ID: 18188
Species ppo ppo ath ath bra bna bna
Symbol LOC7491724 LOC18106822 AT5G43620 AT1G66500 LOC103831110 LOC106348573 LOC106353885
Function* uncharacterized LOC7491724 polyadenylation and cleavage factor homolog 1 Pre-mRNA cleavage complex II Pre-mRNA cleavage complex II polyadenylation and cleavage factor homolog 1 polyadenylation and cleavage factor homolog 5-like polyadenylation and cleavage factor homolog 1-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04626 Plant-pathogen interaction 3
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04016 MAPK signaling pathway - plant 2
bna04626 Plant-pathogen interaction 2
bna03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 7491724 18106822 834382 842968 103831110 106348573 106353885
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