ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-m.4	7498080	40S ribosomal protein S24-1
ppo-u.5	7498080	40S ribosomal protein S24-1
ppo-r.4	7498080	40S ribosomal protein S24-1
ppo-u.5	7467486	40S ribosomal protein S24-1
ppo-u.5	18110984	40S ribosomal protein S24-1
ppo-u.5	18098933	40S ribosomal protein S24-1
gma-u.5	100305568	uncharacterized LOC100305568
gma-u.5	100802918	40S ribosomal protein S24-2-like
gma-u.5	100499852	uncharacterized LOC100499852
mtr-u.5	11431323	40S ribosomal protein S24-1
mtr-u.5	11405915	40S ribosomal protein S24-1
ath-u.5	AT3G04920	Ribosomal protein S24e family protein
ath-u.5	AT5G28060	Ribosomal protein S24e family protein
bra-r.6	103854641	40S ribosomal protein S24-1
bra-r.6	103850022	40S ribosomal protein S24-1
bra-r.6	103874568	40S ribosomal protein S24-1
vvi-u.5	100243420	40S ribosomal protein S24-2-like
vvi-u.5	100853567	small ribosomal subunit protein eS24z
ghi-r.1	107893222	40S ribosomal protein S24-1
ghi-r.1	107894739	40S ribosomal protein S24-1
ghi-r.1	107899149	40S ribosomal protein S24-1
bna-r.1	125607165	40S ribosomal protein S24-1-like
bna-r.1	125602054	40S ribosomal protein S24-1-like
bna-r.1	125577698	40S ribosomal protein S24-1
cit-r.1	102608879	40S ribosomal protein S24-1
cit-r.1	102609400	40S ribosomal protein S24-1
cit-r.1	102627216	40S ribosomal protein S24-1
sly-u.5	101253000	small ribosomal subunit protein eS24z
sly-u.5	101258992	small ribosomal subunit protein eS24z
sly-u.5	101244617	small ribosomal subunit protein eS24z
sot-r.1	102600146	40S ribosomal protein S24-1
sot-r.1	102590529	40S ribosomal protein S24-1
sot-r.1	102595901	40S ribosomal protein S24-1
nta-r.1	107791538	small ribosomal subunit protein eS24z
nta-r.1	107798733	small ribosomal subunit protein eS24z
nta-r.1	107768485	small ribosomal subunit protein eS24z
osa-u.5	4324671	small ribosomal subunit protein eS24z
osa-u.5	4328797	small ribosomal subunit protein eS24z
osa-u.5	4341282	small ribosomal subunit protein eS24z
zma-u.5	542641	40S ribosomal protein S24
zma-u.5	103629822	40S ribosomal protein S24-1-like
zma-u.5	100284180	40S ribosomal protein S24
tae-r.2	123147979	40S ribosomal protein S24-1
tae-r.2	123144447	40S ribosomal protein S24-1
tae-r.2	123156961	40S ribosomal protein S24-1
hvu-r.1	123407800	40S ribosomal protein S24-1
hvu-r.1	123450305	40S ribosomal protein S24-1-like
sbi-r.1	8069811	40S ribosomal protein S24-1
sbi-r.1	8085549	40S ribosomal protein S24-1
sbi-r.1	8076707	40S ribosomal protein S24-1
bdi-r.1	100846487	40S ribosomal protein S24-1
bdi-r.1	100833592	40S ribosomal protein S24-1
cre-r.1	CHLRE_10g456200v5	ribosomal protein S24

Top 50 coexpressed genes to 7498080 (ppo-m.4 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 7498080 (ppo-m.4 coexpression data)

CoexMap"7498080"

[Cytoscape]

Annotation

functional annotation

KEGG

pop03010 [list] [network] Ribosome (698 genes)

GO BP

GO:0006412 [list] [network] translation

(598 genes)

IEA

GO CC

GO:0005840 [list] [network] ribosome

(453 genes)

IEA

GO MF

GO:0003735 [list] [network] structural constituent of ribosome

(439 genes)

IEA

Protein

XP_002315773.2 [sequence] [blastp]
XP_052312299.1 [sequence] [blastp]

Subcellular
localization
wolf

mito 4, chlo 3, cyto 2, nucl 1	(predict for XP_002315773.2)
chlo 4, mito 4, nucl 1	(predict for XP_052312299.1)

Subcellular
localization
TargetP

mito 4, other 3	(predict for XP_002315773.2)
mito 4, other 3	(predict for XP_052312299.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-m.4 for 7498080	ppo-u.5 for 7498080	ppo-r.4 for 7498080	ppo-u.5 for 7467486	ppo-u.5 for 18110984	ppo-u.5 for 18098933	gma-u.5 for 100305568	gma-u.5 for 100802918	gma-u.5 for 100499852	mtr-u.5 for 11431323	mtr-u.5 for 11405915	ath-u.5 for AT3G04920	ath-u.5 for AT5G28060	bra-r.6 for 103854641	bra-r.6 for 103850022	bra-r.6 for 103874568	vvi-u.5 for 100243420	vvi-u.5 for 100853567	ghi-r.1 for 107893222	ghi-r.1 for 107894739	ghi-r.1 for 107899149	bna-r.1 for 125607165	bna-r.1 for 125602054	bna-r.1 for 125577698	cit-r.1 for 102608879	cit-r.1 for 102609400	cit-r.1 for 102627216	sly-u.5 for 101253000	sly-u.5 for 101258992	sly-u.5 for 101244617	sot-r.1 for 102600146	sot-r.1 for 102590529	sot-r.1 for 102595901	nta-r.1 for 107791538	nta-r.1 for 107798733	nta-r.1 for 107768485	osa-u.5 for 4324671	osa-u.5 for 4328797	osa-u.5 for 4341282	zma-u.5 for 542641	zma-u.5 for 103629822	zma-u.5 for 100284180	tae-r.2 for 123147979	tae-r.2 for 123144447	tae-r.2 for 123156961	hvu-r.1 for 123407800	hvu-r.1 for 123450305	sbi-r.1 for 8069811	sbi-r.1 for 8085549	sbi-r.1 for 8076707	bdi-r.1 for 100846487	bdi-r.1 for 100833592	cre-r.1 for CHLRE_10g456200v5

Ortholog

Ortholog ID: 1421

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

40S ribosomal protein S24-1

uncharacterized LOC100305568

40S ribosomal protein S24-2-like

uncharacterized LOC100499852

40S ribosomal protein S24-1

Ribosomal protein S24e family protein

40S ribosomal protein S24-1

40S ribosomal protein S24-2-like

small ribosomal subunit protein eS24z

40S ribosomal protein S24-1

40S ribosomal protein S24-1-like

40S ribosomal protein S24-1

small ribosomal subunit protein eS24z

40S ribosomal protein S24-1

small ribosomal subunit protein eS24z

40S ribosomal protein S24

ribosomal protein S24

40S ribosomal protein S24-1

40S ribosomal protein S24-1-like

40S ribosomal protein S24-1

ribosomal protein S24

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	18
ppo03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03018	RNA degradation	2
cit03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	14
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	13
sot00220	Arginine biosynthesis	2
sot00240	Pyrimidine metabolism	2
sot00250	Alanine, aspartate and glutamate metabolism	2
sot01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	12
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	15
nta03040	Spliceosome	4
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	15
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00710	Carbon fixation by Calvin cycle	4
tae01200	Carbon metabolism	4
tae00220	Arginine biosynthesis	3
tae00250	Alanine, aspartate and glutamate metabolism	3
tae00270	Cysteine and methionine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03010	Ribosome	17

Expression

Expression pattern

Entrez Gene ID^*

7498080

7467486

18110984

100305568

100802918

100499852

11431323

11405915

819652

832878

103854641

103850022

103874568

100243420

100853567

107899149

107934276

121206341

125602054

111211530

106449179

102608879

102609400

102627216

101253000

101258992

101244617

102600146

102590529

102595901

107791538

107768485

107801095

4324671

4328797

4341282

542641

100284180

100280577

123147979

123165192

123062030

123402042

8069811

8085549

8076707

100846487

100833592

5723924

The preparation time of this page was 0.2 [sec].


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	6	3	2	2	3	2	3	3	3	3	3	3	3	3	3	2	3	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7498080 (ppo-m.4 coexpression data)

Top 50 enrichment test to 7498080 (ppo-m.4 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**