ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-r.4	18108317	uncharacterized LOC18108317
ppo-u.5	18108317	uncharacterized LOC18108317
ppo-u.5	18108659	uncharacterized LOC18108659
ppo-u.5	7465162	uncharacterized LOC7465162
gma-u.5	100816328	uncharacterized LOC100816328
gma-u.5	100815787	uncharacterized LOC100815787
mtr-u.5	25489842	uncharacterized LOC25489842
mtr-u.5	25489845	uncharacterized LOC25489845
mtr-u.5	11434409	uncharacterized LOC11434409
ath-u.5	AT2G40520	Nucleotidyltransferase family protein
ath-u.5	AT3G51620	PAP/OAS1 substrate-binding domain superfamily
ath-u.5	AT3G56320	PAP/OAS1 substrate-binding domain superfamily
vvi-u.5	100258499	uncharacterized LOC100258499
vvi-u.5	100253615	uncharacterized LOC100253615
vvi-u.5	100253523	uncharacterized LOC100253523
sly-u.5	101256025	uncharacterized LOC101256025
sly-u.5	101246260	uncharacterized LOC101246260
osa-u.5	4349599	uncharacterized LOC4349599
osa-u.5	4351312	uncharacterized LOC4351312
zma-u.5	103651679	PAP/OAS1 substrate-binding domain superfamily
zma-u.5	100381756	uncharacterized LOC100381756
zma-u.5	100273722	uncharacterized LOC100273722

Top 50 coexpressed genes to 18108317 (ppo-r.4 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 18108317 (ppo-r.4 coexpression data)

CoexMap"18108317"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0016779 [list] [network] nucleotidyltransferase activity

(140 genes)

IEA

Protein

XP_024447607.2 [sequence] [blastp]
XP_024447608.2 [sequence] [blastp]
XP_024447609.2 [sequence] [blastp]
XP_024447610.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, mito 2, chlo 1	(predict for XP_024447607.2)
nucl 6, mito 2, chlo 1	(predict for XP_024447608.2)
nucl 6, mito 2, chlo 1	(predict for XP_024447609.2)
nucl 8, cyto 1	(predict for XP_024447610.2)

Subcellular
localization
TargetP

chlo 4	(predict for XP_024447607.2)
chlo 4	(predict for XP_024447608.2)
chlo 4	(predict for XP_024447609.2)
other 8	(predict for XP_024447610.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-r.4 for 18108317	ppo-u.5 for 18108317	ppo-u.5 for 18108659	ppo-u.5 for 7465162	gma-u.5 for 100816328	gma-u.5 for 100815787	mtr-u.5 for 25489842	mtr-u.5 for 25489845	mtr-u.5 for 11434409	ath-u.5 for AT2G40520	ath-u.5 for AT3G51620	ath-u.5 for AT3G56320	vvi-u.5 for 100258499	vvi-u.5 for 100253615	vvi-u.5 for 100253523	sly-u.5 for 101256025	sly-u.5 for 101246260	osa-u.5 for 4349599	osa-u.5 for 4351312	zma-u.5 for 103651679	zma-u.5 for 100381756	zma-u.5 for 100273722

Ortholog

Ortholog ID: 1572

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC18108317

uncharacterized LOC7465162

uncharacterized LOC100814626

uncharacterized LOC100797780

uncharacterized LOC11434409

uncharacterized LOC25489842

PAP/OAS1 substrate-binding domain superfamily

Nucleotidyltransferase family protein

uncharacterized LOC103841540

uncharacterized LOC100253523

uncharacterized LOC100253615

protein HESO1

uncharacterized LOC107903624

uncharacterized LOC106349056

uncharacterized LOC106450696

uncharacterized LOC102622468

uncharacterized LOC102618267

uncharacterized LOC101246260

uncharacterized LOC101256025

uncharacterized LOC102602843

uncharacterized LOC102589320

uncharacterized LOC107798277

uncharacterized LOC107799056

uncharacterized LOC4351312

uncharacterized LOC4349599

uncharacterized LOC100273722

uncharacterized LOC100381756

uncharacterized LOC123091528

uncharacterized LOC123086466

uncharacterized LOC123448065

uncharacterized LOC123399781

uncharacterized LOC8067612

protein HESO1

uncharacterized LOC100826374

protein HESO1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	2
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	2
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00010	Glycolysis / Gluconeogenesis	2
bra00260	Glycine, serine and threonine metabolism	2
bra01200	Carbon metabolism	2
bra01230	Biosynthesis of amino acids	2
bra00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00250	Alanine, aspartate and glutamate metabolism	2
vvi00500	Starch and sucrose metabolism	2
vvi00561	Glycerolipid metabolism	2
vvi00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	3
bna03018	RNA degradation	2
bna04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00330	Arginine and proline metabolism	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	2
cit04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00970	Aminoacyl-tRNA biosynthesis	3
cit00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
cit01240	Biosynthesis of cofactors	2
cit03040	Spliceosome	2
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	3
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00500	Starch and sucrose metabolism	4
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00230	Purine metabolism	2
sot00250	Alanine, aspartate and glutamate metabolism	2
sot01232	Nucleotide metabolism	2
sot01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04712	Circadian rhythm - plant	2
nta03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	8
nta04075	Plant hormone signal transduction	6
nta00730	Thiamine metabolism	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04626	Plant-pathogen interaction	3
zma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03083	Polycomb repressive complex	3
tae03250	Viral life cycle - HIV-1	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03083	Polycomb repressive complex	3
tae03250	Viral life cycle - HIV-1	3
tae04620	Toll-like receptor signaling pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00514	Other types of O-glycan biosynthesis	2
bdi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	2
cre03018	RNA degradation	2

Expression

Expression pattern

Entrez Gene ID^*

18108317

7465162

100814626

100797780

11434409

25489842

824325

818647

103841540

100253523

100253615

107962375

107903624

106349056

106450696

102622468

102618267

101246260

101256025

102602843

102589320

107798277

107799056

4351312

4349599

100273722

100381756

123091528

123086466

123448065

123399781

8067612

8067188

100826374

100840351

5719689

The preparation time of this page was 0.1 [sec].


Species	ppo	gma	mtr	ath	vvi	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	4	2	3	3	3	2	2	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 18108317 (ppo-r.4 coexpression data)

Top 50 enrichment test to 18108317 (ppo-r.4 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**