ATTED-II : GeneCoexpression result

Species	Gene	Description
ppo-r.4	7460828	uncharacterized LOC7460828
ppo-u.5	7460828	uncharacterized LOC7460828
ppo-m.4	7460828	uncharacterized LOC7460828
gma-u.5	100808770	vicilin-like seed storage protein At2g18540
gma-u.5	100778706	DEAD-box ATP-dependent RNA helicase 42
mtr-u.5	25487355	DEAD-box ATP-dependent RNA helicase 42
ath-u.5	AT5G53800	nucleic acid-binding protein
bra-r.6	103844847	vicilin-like seed storage protein At2g18540
vvi-u.5	100243517	vicilin-like seed storage protein At2g18540
ghi-r.1	107948645	vicilin-like seed storage protein At2g18540
ghi-r.1	121216898	vicilin-like seed storage protein At2g18540
bna-r.1	106371277	vicilin-like seed storage protein At2g18540
bna-r.1	106418720	vicilin-like seed storage protein At2g18540
cit-r.1	102620193	vicilin-like seed storage protein At2g18540
sly-u.5	101248648	uncharacterized LOC101248648
sot-r.1	102588621	RNA-binding protein 25
nta-r.1	107821097	uncharacterized LOC107821097
nta-r.1	107791329	uncharacterized LOC107791329
osa-u.5	4336481	DEAD-box ATP-dependent RNA helicase 42
zma-u.5	100193500	OSJNBa0074L08.19-like protein
tae-r.2	123046039	RNA-binding protein 25
tae-r.2	123053918	RNA-binding protein 25
hvu-r.1	123427324	vicilin-like seed storage protein At2g18540
sbi-r.1	110436525	vicilin-like seed storage protein At2g18540
bdi-r.1	100835067	vicilin-like seed storage protein At2g18540
cre-r.1	CHLRE_03g176050v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_024467311.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9

(predict for XP_024467311.1)

Subcellular
localization
TargetP

chlo 8, other 5

(predict for XP_024467311.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-r.4 for 7460828	ppo-u.5 for 7460828	ppo-m.4 for 7460828	gma-u.5 for 100808770	gma-u.5 for 100778706	mtr-u.5 for 25487355	ath-u.5 for AT5G53800	bra-r.6 for 103844847	vvi-u.5 for 100243517	ghi-r.1 for 107948645	ghi-r.1 for 121216898	bna-r.1 for 106371277	bna-r.1 for 106418720	cit-r.1 for 102620193	sly-u.5 for 101248648	sot-r.1 for 102588621	nta-r.1 for 107821097	nta-r.1 for 107791329	osa-u.5 for 4336481	zma-u.5 for 100193500	tae-r.2 for 123046039	tae-r.2 for 123053918	hvu-r.1 for 123427324	sbi-r.1 for 110436525	bdi-r.1 for 100835067	cre-r.1 for CHLRE_03g176050v5

Ortholog

Ortholog ID: 10996

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC7460828

vicilin-like seed storage protein At2g18540

DEAD-box ATP-dependent RNA helicase 42

nucleic acid-binding protein

vicilin-like seed storage protein At2g18540

uncharacterized LOC101248648

RNA-binding protein 25

uncharacterized LOC107821097

uncharacterized LOC107791329

DEAD-box ATP-dependent RNA helicase 42

OSJNBa0074L08.19-like protein

RNA-binding protein 25

vicilin-like seed storage protein At2g18540

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2
gma03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	2
mtr04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03015	mRNA surveillance pathway	2
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	4
ghi03250	Viral life cycle - HIV-1	2
ghi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	4
ghi03250	Viral life cycle - HIV-1	2
ghi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03022	Basal transcription factors	2
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	6
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	6
cre03015	mRNA surveillance pathway	2
cre03020	RNA polymerase	2
cre03420	Nucleotide excision repair	2

Expression

Expression pattern

Entrez Gene ID^*

7460828

100808770

100778706

25487355

835461

103844847

100243517

107948645

121216898

106371277

106418720

102620193

101248648

102588621

107821097

107791329

4336481

100193500

123046039

123053918

123427324

110436525

100835067

5728855

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 7460828 (ppo-r.4 coexpression data)

Top 50 enrichment test to 7460828 (ppo-r.4 coexpression data)


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	2	1	1	1	1	2	2	1	1	1	2	1	1	2	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7460828 (ppo-r.4 coexpression data)

Top 50 enrichment test to 7460828 (ppo-r.4 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**