ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-r.4	7475027	protein CLT1, chloroplastic
ppo-u.5	7475027	protein CLT1, chloroplastic
ppo-m.4	7475027	protein CLT1, chloroplastic
gma-u.5	100819888	protein CLT3, chloroplastic
gma-u.5	100802761	protein CLT2, chloroplastic
gma-u.5	100787260	protein CLT2-like
mtr-u.5	25479779	protein CLT3, chloroplastic
mtr-u.5	11431856	protein CLT1, chloroplastic
mtr-u.5	11431353	protein CLT2, chloroplastic
ath-u.5	CLT2	CRT (chloroquine-resistance transporter)-like transporter 2
ath-u.5	CLT3	CRT (chloroquine-resistance transporter)-like transporter 3
ath-u.5	CLT1	CRT (chloroquine-resistance transporter)-like transporter 1
bra-r.6	103851269	protein CLT1, chloroplastic
bra-r.6	103862112	protein CLT2, chloroplastic
bra-r.6	103850817	protein CLT3, chloroplastic
vvi-u.5	100267712	protein CLT2, chloroplastic
vvi-u.5	100265335	protein CLT1, chloroplastic
ghi-r.1	107905144	protein CLT2, chloroplastic
ghi-r.1	107957831	protein CLT2, chloroplastic
ghi-r.1	107945075	protein CLT1, chloroplastic
bna-r.1	106380805	protein CLT3, chloroplastic
bna-r.1	106383820	protein CLT3, chloroplastic
bna-r.1	106396595	protein CLT2, chloroplastic
cit-r.1	102610256	protein CLT2, chloroplastic
cit-r.1	102628201	protein CLT1, chloroplastic
sly-u.5	101254772	protein CLT1, chloroplastic
sly-u.5	101260721	protein CLT2, chloroplastic
sot-r.1	102597772	protein CLT2, chloroplastic
sot-r.1	102597866	protein CLT1, chloroplastic-like
nta-r.1	107762960	protein CLT2, chloroplastic
nta-r.1	107793114	protein CLT3, chloroplastic
nta-r.1	107808626	protein CLT2, chloroplastic
osa-u.5	4325409	protein CLT1, chloroplastic
osa-u.5	4331958	protein CLT2, chloroplastic
osa-u.5	4352325	protein CLT2, chloroplastic
zma-u.5	100277401	uncharacterized LOC100277401
zma-u.5	103636274	protein CLT1, chloroplastic
zma-u.5	100272467	uncharacterized LOC100272467
tae-r.2	123072554	protein CLT1, chloroplastic
tae-r.2	123063478	protein CLT1, chloroplastic
tae-r.2	123080765	protein CLT1, chloroplastic
hvu-r.1	123445552	protein CLT1, chloroplastic-like
hvu-r.1	123449423	protein CLT2, chloroplastic-like
sbi-r.1	8077377	protein CLT1, chloroplastic
sbi-r.1	8054244	protein CLT2, chloroplastic
sbi-r.1	110437699	protein CLT2, chloroplastic-like
bdi-r.1	100838445	protein CLT2, chloroplastic
bdi-r.1	100824592	protein CLT1, chloroplastic
bdi-r.1	100821841	protein CLT2, chloroplastic
cre-r.1	CHLRE_01g030300v5	uncharacterized protein

Top 50 coexpressed genes to 7475027 (ppo-r.4 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 7475027 (ppo-r.4 coexpression data)

CoexMap"7475027"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_024464132.2 [sequence] [blastp]
XP_052311971.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 7, chlo_mito 5, mito 2	(predict for XP_024464132.2)
chlo 6, chlo_mito 5, mito 2	(predict for XP_052311971.1)

Subcellular
localization
TargetP

chlo 7, mito 6	(predict for XP_024464132.2)
chlo 7, mito 6	(predict for XP_052311971.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-r.4 for 7475027	ppo-u.5 for 7475027	ppo-m.4 for 7475027	gma-u.5 for 100819888	gma-u.5 for 100802761	gma-u.5 for 100787260	mtr-u.5 for 25479779	mtr-u.5 for 11431856	mtr-u.5 for 11431353	ath-u.5 for CLT2	ath-u.5 for CLT3	ath-u.5 for CLT1	bra-r.6 for 103851269	bra-r.6 for 103862112	bra-r.6 for 103850817	vvi-u.5 for 100267712	vvi-u.5 for 100265335	ghi-r.1 for 107905144	ghi-r.1 for 107957831	ghi-r.1 for 107945075	bna-r.1 for 106380805	bna-r.1 for 106383820	bna-r.1 for 106396595	cit-r.1 for 102610256	cit-r.1 for 102628201	sly-u.5 for 101254772	sly-u.5 for 101260721	sot-r.1 for 102597772	sot-r.1 for 102597866	nta-r.1 for 107762960	nta-r.1 for 107793114	nta-r.1 for 107808626	osa-u.5 for 4325409	osa-u.5 for 4331958	osa-u.5 for 4352325	zma-u.5 for 100277401	zma-u.5 for 103636274	zma-u.5 for 100272467	tae-r.2 for 123072554	tae-r.2 for 123063478	tae-r.2 for 123080765	hvu-r.1 for 123445552	hvu-r.1 for 123449423	sbi-r.1 for 8077377	sbi-r.1 for 8054244	sbi-r.1 for 110437699	bdi-r.1 for 100838445	bdi-r.1 for 100824592	bdi-r.1 for 100821841	cre-r.1 for CHLRE_01g030300v5

Ortholog

Ortholog ID: 2169

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

CLT2

CLT3

CLT1

Function^*

protein CLT1, chloroplastic

protein CLT3, chloroplastic

protein CLT2, chloroplastic

protein CLT2-like

protein CLT3, chloroplastic

protein CLT1, chloroplastic

protein CLT2, chloroplastic

CRT (chloroquine-resistance transporter)-like transporter 2

CRT (chloroquine-resistance transporter)-like transporter 3

CRT (chloroquine-resistance transporter)-like transporter 1

protein CLT1, chloroplastic

protein CLT2, chloroplastic

protein CLT3, chloroplastic

protein CLT2, chloroplastic

protein CLT1, chloroplastic

protein CLT2, chloroplastic

protein CLT1, chloroplastic

protein CLT3, chloroplastic

protein CLT1, chloroplastic

protein CLT2, chloroplastic

protein CLT1, chloroplastic

protein CLT2, chloroplastic

protein CLT1, chloroplastic-like

protein CLT2, chloroplastic

protein CLT3, chloroplastic

protein CLT1, chloroplastic

protein CLT2, chloroplastic

protein CLT1, chloroplastic

uncharacterized LOC100272467

uncharacterized LOC100277036

protein CLT1, chloroplastic

protein CLT2, chloroplastic

protein CLT1, chloroplastic-like

protein CLT2, chloroplastic-like

protein CLT1, chloroplastic

protein CLT2, chloroplastic

protein CLT2, chloroplastic-like

protein CLT2, chloroplastic

protein CLT1, chloroplastic

protein CLT2, chloroplastic

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01240	Biosynthesis of cofactors	3
gma00740	Riboflavin metabolism	2
gma00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00970	Aminoacyl-tRNA biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00970	Aminoacyl-tRNA biosynthesis	3
gma00500	Starch and sucrose metabolism	2
gma01200	Carbon metabolism	2
gma01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01230	Biosynthesis of amino acids	6
mtr00400	Phenylalanine, tyrosine and tryptophan biosynthesis	5
mtr00350	Tyrosine metabolism	3
mtr00360	Phenylalanine metabolism	2
mtr00950	Isoquinoline alkaloid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00970	Aminoacyl-tRNA biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04016	MAPK signaling pathway - plant	5
ath04075	Plant hormone signal transduction	5
ath00270	Cysteine and methionine metabolism	4
ath00480	Glutathione metabolism	2
ath01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01230	Biosynthesis of amino acids	5
bra00260	Glycine, serine and threonine metabolism	4
bra00270	Cysteine and methionine metabolism	4
bra01200	Carbon metabolism	4
bra00230	Purine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01240	Biosynthesis of cofactors	3
bra00730	Thiamine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01240	Biosynthesis of cofactors	5
bra00270	Cysteine and methionine metabolism	4
bra00480	Glutathione metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00400	Phenylalanine, tyrosine and tryptophan biosynthesis	3
vvi01230	Biosynthesis of amino acids	3
vvi00940	Phenylpropanoid biosynthesis	3
vvi00020	Citrate cycle (TCA cycle)	2
vvi00130	Ubiquinone and other terpenoid-quinone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00230	Purine metabolism	2
ghi00240	Pyrimidine metabolism	2
ghi01232	Nucleotide metabolism	2
ghi01240	Biosynthesis of cofactors	2
ghi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00270	Cysteine and methionine metabolism	7
bna00543	Exopolysaccharide biosynthesis	7
bna00920	Sulfur metabolism	7
bna01200	Carbon metabolism	7
bna01230	Biosynthesis of amino acids	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00052	Galactose metabolism	2
cit00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01230	Biosynthesis of amino acids	3
sly00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
sly00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01240	Biosynthesis of cofactors	6
sot01212	Fatty acid metabolism	3
sot00630	Glyoxylate and dicarboxylate metabolism	2
sot00760	Nicotinate and nicotinamide metabolism	2
sot00061	Fatty acid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00730	Thiamine metabolism	3
nta00230	Purine metabolism	2
nta01232	Nucleotide metabolism	2
nta01240	Biosynthesis of cofactors	2
nta00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00230	Purine metabolism	2
nta00730	Thiamine metabolism	2
nta01232	Nucleotide metabolism	2
nta01240	Biosynthesis of cofactors	2
nta00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01240	Biosynthesis of cofactors	5
osa00760	Nicotinate and nicotinamide metabolism	3
osa00450	Selenocompound metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01240	Biosynthesis of cofactors	4
osa00860	Porphyrin metabolism	3
osa01230	Biosynthesis of amino acids	2
osa00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00020	Citrate cycle (TCA cycle)	5
zma01200	Carbon metabolism	5
zma01210	2-Oxocarboxylic acid metabolism	4
zma00785	Lipoic acid metabolism	3
zma01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00400	Phenylalanine, tyrosine and tryptophan biosynthesis	5
tae01230	Biosynthesis of amino acids	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04620	Toll-like receptor signaling pathway	3
tae04075	Plant hormone signal transduction	3
tae00564	Glycerophospholipid metabolism	3
tae00592	alpha-Linolenic acid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00270	Cysteine and methionine metabolism	3
hvu00940	Phenylpropanoid biosynthesis	3
hvu00740	Riboflavin metabolism	2
hvu01240	Biosynthesis of cofactors	2
hvu00380	Tryptophan metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00970	Aminoacyl-tRNA biosynthesis	2
hvu01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2
sbi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00970	Aminoacyl-tRNA biosynthesis	4
bdi03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01200	Carbon metabolism	3
bdi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00510	N-Glycan biosynthesis	3
bdi04141	Protein processing in endoplasmic reticulum	3

Expression

Expression pattern

Entrez Gene ID^*

7475027

100819888

100802761

100787260

25479779

11431856

11431353

828548

831090

832058

103851269

103862112

103850817

100267712

100265335

107957831

107945075

107939443

106380805

106425680

106442006

102610256

102628201

101254772

101260721

102597772

102597866

107762960

107808626

107807676

4325409

4331958

4352325

103636274

100272467

100277036

123072554

123098384

123119892

123445552

123449423

8077377

8054244

110437699

100838445

100824592

100821841

5715364

The preparation time of this page was 0.1 [sec].


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	3	3	3	3	2	3	3	2	2	2	3	3	3	3	2	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7475027 (ppo-r.4 coexpression data)

Top 50 enrichment test to 7475027 (ppo-r.4 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**