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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-r.4   7478377   pentatricopeptide repeat-containing protein At1g15510, chloroplastic 
 ppo-u.5   7478377   pentatricopeptide repeat-containing protein At1g15510, chloroplastic 
 ppo-m.4   7478377   pentatricopeptide repeat-containing protein At1g15510, chloroplastic 
 gma-u.5   100794338   pentatricopeptide repeat-containing protein At1g15510, chloroplastic 
 mtr-u.5   25491357   pentatricopeptide repeat-containing protein At1g15510, chloroplastic 
 ath-u.5   ECB2   Tetratricopeptide repeat (TPR)-like superfamily protein 
 bra-r.6   103872347   pentatricopeptide repeat-containing protein At1g15510, chloroplastic 
 vvi-u.5   100263494   pentatricopeptide repeat-containing protein At1g15510, chloroplastic 
 ghi-r.1   107949565   pentatricopeptide repeat-containing protein At1g15510, chloroplastic 
 ghi-r.1   107951873   pentatricopeptide repeat-containing protein At1g15510, chloroplastic 
 bna-r.1   106346650   pentatricopeptide repeat-containing protein At1g15510, chloroplastic 
 bna-r.1   125587499   pentatricopeptide repeat-containing protein At1g15510, chloroplastic 
 cit-r.1   102623370   pentatricopeptide repeat-containing protein At1g15510, chloroplastic 
 sly-u.5   101255183   pentatricopeptide repeat-containing protein At1g15510, chloroplastic 
 sot-r.1   102584228   pentatricopeptide repeat-containing protein At1g15510, chloroplastic 
 nta-r.1   107806955   pentatricopeptide repeat-containing protein At1g15510, chloroplastic 
 nta-r.1   107763547   pentatricopeptide repeat-containing protein At1g15510, chloroplastic-like 
 osa-u.5   4339686   pentatricopeptide repeat-containing protein At1g15510, chloroplastic 
 zma-u.5   103630763   pentatricopeptide repeat-containing protein At1g15510, chloroplastic 
 tae-r.2   123069274   pentatricopeptide repeat-containing protein At1g15510, chloroplastic 
 tae-r.2   123147706   pentatricopeptide repeat-containing protein At1g15510, chloroplastic 
 tae-r.2   123183222   pentatricopeptide repeat-containing protein At1g15510, chloroplastic 
 hvu-r.1   123451314   pentatricopeptide repeat-containing protein At1g15510, chloroplastic 
 sbi-r.1   8064710   pentatricopeptide repeat-containing protein At1g15510, chloroplastic 
 bdi-r.1   100831637   pentatricopeptide repeat-containing protein At1g15510, chloroplastic 
 bdi-r.1   104584633   uncharacterized LOC104584633 

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Top 50 coexpressed genes to 7478377 (ppo-r.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7478377 (ppo-r.4 coexpression data)

CoexMap"7478377"


ppoLOC7478377 | Entrez gene ID : 7478377    
Species ppo gma mtr ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 1 1 1 1 1 2 2 1 1 1 2 1 1 3 1 1 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (384 genes)  IEA  
GO CC
GO MF
GO:0008270 [list] [network] zinc ion binding  (777 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1480 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4916 genes)  IEA  
Protein XP_002303270.3 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  mito 1  (predict for XP_002303270.3)
Subcellular
localization
TargetP
chlo 7  (predict for XP_002303270.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-r.4
for
7478377
ppo-u.5
for
7478377
ppo-m.4
for
7478377
gma-u.5
for
100794338
mtr-u.5
for
25491357
ath-u.5
for
ECB2
bra-r.6
for
103872347
vvi-u.5
for
100263494
ghi-r.1
for
107949565
ghi-r.1
for
107951873
bna-r.1
for
106346650
bna-r.1
for
125587499
cit-r.1
for
102623370
sly-u.5
for
101255183
sot-r.1
for
102584228
nta-r.1
for
107806955
nta-r.1
for
107763547
osa-u.5
for
4339686
zma-u.5
for
103630763
tae-r.2
for
123069274
tae-r.2
for
123147706
tae-r.2
for
123183222
hvu-r.1
for
123451314
sbi-r.1
for
8064710
bdi-r.1
for
100831637
bdi-r.1
for
104584633


Ortholog ID: 11047
Species ppo gma mtr ath bra vvi ghi ghi bna bna cit sly sot nta nta osa zma tae tae tae hvu sbi bdi bdi
Symbol LOC7478377 LOC100794338 LOC25491357 ECB2 LOC103872347 LOC100263494 LOC107949565 LOC107951873 LOC106346650 LOC125587499 LOC102623370 LOC101255183 LOC102584228 LOC107806955 LOC107763547 LOC4339686 LOC103630763 LOC123069274 LOC123147706 LOC123183222 LOC123451314 LOC8064710 LOC100831637 LOC104584633
Function* pentatricopeptide repeat-containing protein At1g15510, chloroplastic pentatricopeptide repeat-containing protein At1g15510, chloroplastic pentatricopeptide repeat-containing protein At1g15510, chloroplastic Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At1g15510, chloroplastic pentatricopeptide repeat-containing protein At1g15510, chloroplastic pentatricopeptide repeat-containing protein At1g15510, chloroplastic pentatricopeptide repeat-containing protein At1g15510, chloroplastic pentatricopeptide repeat-containing protein At1g15510, chloroplastic pentatricopeptide repeat-containing protein At1g15510, chloroplastic pentatricopeptide repeat-containing protein At1g15510, chloroplastic pentatricopeptide repeat-containing protein At1g15510, chloroplastic pentatricopeptide repeat-containing protein At1g15510, chloroplastic pentatricopeptide repeat-containing protein At1g15510, chloroplastic pentatricopeptide repeat-containing protein At1g15510, chloroplastic-like pentatricopeptide repeat-containing protein At1g15510, chloroplastic pentatricopeptide repeat-containing protein At1g15510, chloroplastic pentatricopeptide repeat-containing protein At1g15510, chloroplastic pentatricopeptide repeat-containing protein At1g15510, chloroplastic pentatricopeptide repeat-containing protein At1g15510, chloroplastic pentatricopeptide repeat-containing protein At1g15510, chloroplastic pentatricopeptide repeat-containing protein At1g15510, chloroplastic pentatricopeptide repeat-containing protein At1g15510, chloroplastic uncharacterized LOC104584633
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 3
bna03410 Base excision repair 3
bna03420 Nucleotide excision repair 3
bna03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 3
bna03410 Base excision repair 3
bna03420 Nucleotide excision repair 3
bna03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 7478377 100794338 25491357 838121 103872347 100263494 107949565 107951873 106346650 125587499 102623370 101255183 102584228 107806955 107763547 4339686 103630763 123069274 123147706 123183222 123451314 8064710 100831637 104584633
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