ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-r.4	7492425	AT-hook motif nuclear-localized protein 20
ppo-u.5	7492425	AT-hook motif nuclear-localized protein 20
ppo-u.5	7458128	AT-hook motif nuclear-localized protein 15
ppo-u.5	7467535	AT-hook motif nuclear-localized protein 20
ppo-u.5	7485665	AT-hook motif nuclear-localized protein 25
gma-u.5	100798994	AT-hook motif nuclear-localized protein 20
gma-u.5	100819125	AT-hook motif nuclear-localized protein 20
mtr-u.5	11425082	AT-hook motif nuclear-localized protein 19
mtr-u.5	25484399	AT-hook motif nuclear-localized protein 20
mtr-u.5	25489330	AT-hook motif nuclear-localized protein 15
ath-u.5	AGF2	AT-hook protein of GA feedback 2
ath-u.5	AHL20	AT-hook motif nuclear-localized protein 20
ath-u.5	AGF1	AT-hook protein of GA feedback 1
bra-r.6	103828491	AT-hook motif nuclear-localized protein 25
bra-r.6	103830018	AT-hook motif nuclear-localized protein 15
bra-r.6	103872877	AT-hook motif nuclear-localized protein 27
vvi-u.5	100242785	AT-hook motif nuclear-localized protein 25
vvi-u.5	100244453	AT-hook motif nuclear-localized protein 19
vvi-u.5	100245113	AT-hook motif nuclear-localized protein 25
ghi-r.1	107949228	AT-hook motif nuclear-localized protein 25
ghi-r.1	121203415	AT-hook motif nuclear-localized protein 25
ghi-r.1	121228234	AT-hook motif nuclear-localized protein 25
bna-r.1	111210254	AT-hook motif nuclear-localized protein 27
bna-r.1	106449083	AT-hook motif nuclear-localized protein 29-like
bna-r.1	106445363	AT-hook motif nuclear-localized protein 15
cit-r.1	102610565	AT-hook motif nuclear-localized protein 27
cit-r.1	102607186	AT-hook motif nuclear-localized protein 25-like
cit-r.1	102610631	AT-hook motif nuclear-localized protein 19
sly-u.5	101268318	AT-hook motif nuclear-localized protein 20-like
sly-u.5	101252037	AT-hook motif nuclear-localized protein 20
sly-u.5	101244283	AT-hook motif nuclear-localized protein 27
sot-r.1	102597116	AT-hook motif nuclear-localized protein 15
sot-r.1	102604198	AT-hook motif nuclear-localized protein 20-like
sot-r.1	102585675	AT-hook motif nuclear-localized protein 27
nta-r.1	107827646	AT-hook motif nuclear-localized protein 27
nta-r.1	107824415	AT-hook motif nuclear-localized protein 20
nta-r.1	107822002	AT-hook motif nuclear-localized protein 20-like
osa-u.5	4331173	AT-hook motif nuclear-localized protein 20
osa-u.5	4330508	AT-hook motif nuclear-localized protein 25
osa-u.5	4332382	AT-hook motif nuclear-localized protein 29
zma-u.5	100384452	AT-hook motif nuclear-localized protein 29
zma-u.5	100284873	DNA-binding protein
zma-u.5	100286293	DNA-binding protein
hvu-r.1	123403681	AT-hook motif nuclear-localized protein 20-like
hvu-r.1	123404716	AT-hook motif nuclear-localized protein 25-like
hvu-r.1	123446661	AT-hook motif nuclear-localized protein 19-like
sbi-r.1	8084946	AT-hook motif nuclear-localized protein 22
sbi-r.1	8054840	AT-hook motif nuclear-localized protein 20
sbi-r.1	8072910	AT-hook motif nuclear-localized protein 25
bdi-r.1	100821604	AT-hook motif nuclear-localized protein 23-like

Top 50 coexpressed genes to 7492425 (ppo-r.4 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 7492425 (ppo-r.4 coexpression data)

CoexMap"7492425"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(3662 genes)

IEA

GO MF

GO:0003680 [list] [network] minor groove of adenine-thymine-rich DNA binding	(37 genes)	IEA
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1363 genes)	IEA

Protein

XP_024465670.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 2, extr 2, mito 1, golg 1, E.R. 1, E.R._plas 1, vacu 1, pero 1, cyto_mito 1

(predict for XP_024465670.2)

Subcellular
localization
TargetP

other 6

(predict for XP_024465670.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-r.4 for 7492425	ppo-u.5 for 7492425	ppo-u.5 for 7458128	ppo-u.5 for 7467535	ppo-u.5 for 7485665	gma-u.5 for 100798994	gma-u.5 for 100819125	mtr-u.5 for 11425082	mtr-u.5 for 25484399	mtr-u.5 for 25489330	ath-u.5 for AGF2	ath-u.5 for AHL20	ath-u.5 for AGF1	bra-r.6 for 103828491	bra-r.6 for 103830018	bra-r.6 for 103872877	vvi-u.5 for 100242785	vvi-u.5 for 100244453	vvi-u.5 for 100245113	ghi-r.1 for 107949228	ghi-r.1 for 121203415	ghi-r.1 for 121228234	bna-r.1 for 111210254	bna-r.1 for 106449083	bna-r.1 for 106445363	cit-r.1 for 102610565	cit-r.1 for 102607186	cit-r.1 for 102610631	sly-u.5 for 101268318	sly-u.5 for 101252037	sly-u.5 for 101244283	sot-r.1 for 102597116	sot-r.1 for 102604198	sot-r.1 for 102585675	nta-r.1 for 107827646	nta-r.1 for 107824415	nta-r.1 for 107822002	osa-u.5 for 4331173	osa-u.5 for 4330508	osa-u.5 for 4332382	zma-u.5 for 100384452	zma-u.5 for 100284873	zma-u.5 for 100286293	hvu-r.1 for 123403681	hvu-r.1 for 123404716	hvu-r.1 for 123446661	sbi-r.1 for 8084946	sbi-r.1 for 8054840	sbi-r.1 for 8072910	bdi-r.1 for 100821604

Ortholog

Ortholog ID: 372

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

AGF2

ESC

SOB3

Function^*

AT-hook motif nuclear-localized protein 20

AT-hook motif nuclear-localized protein 15

AT-hook motif nuclear-localized protein 20

AT-hook motif nuclear-localized protein 15

AT-hook motif nuclear-localized protein 19

AT-hook motif nuclear-localized protein 20

AT-hook protein of GA feedback 2

Putative AT-hook DNA-binding family protein

AT-hook motif nuclear-localized protein 25

AT-hook motif nuclear-localized protein 15

AT-hook motif nuclear-localized protein 29

AT-hook motif nuclear-localized protein 25

AT-hook motif nuclear-localized protein 15

AT-hook motif nuclear-localized protein 25

AT-hook motif nuclear-localized protein 20

AT-hook motif nuclear-localized protein 27

AT-hook motif nuclear-localized protein 29

AT-hook motif nuclear-localized protein 15

AT-hook motif nuclear-localized protein 27

AT-hook motif nuclear-localized protein 25-like

AT-hook motif nuclear-localized protein 20-like

AT-hook motif nuclear-localized protein 20

AT-hook motif nuclear-localized protein 27

AT-hook motif nuclear-localized protein 20-like

AT-hook motif nuclear-localized protein 27

AT-hook motif nuclear-localized protein 20-like

AT-hook motif nuclear-localized protein 20

AT-hook motif nuclear-localized protein 20-like

AT-hook motif nuclear-localized protein 15-like

AT-hook motif nuclear-localized protein 25

AT-hook motif nuclear-localized protein 29

AT-hook motif nuclear-localized protein 25

DNA-binding protein

uncharacterized LOC100280097

AT-hook motif nuclear-localized protein 25

AT-hook motif nuclear-localized protein 20

AT-hook motif nuclear-localized protein 23-like

AT-hook motif nuclear-localized protein 20-like

AT-hook motif nuclear-localized protein 20

AT-hook motif nuclear-localized protein 25

AT-hook motif nuclear-localized protein 20

AT-hook motif nuclear-localized protein 23-like

AT-hook motif nuclear-localized protein 25

AT-hook motif nuclear-localized protein 22

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04016	MAPK signaling pathway - plant	3
ppo04626	Plant-pathogen interaction	3
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00943	Isoflavonoid biosynthesis	3
gma00053	Ascorbate and aldarate metabolism	2
gma00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2
mtr00910	Nitrogen metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00908	Zeatin biosynthesis	4
ath04016	MAPK signaling pathway - plant	2
ath04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00940	Phenylpropanoid biosynthesis	7
bra00130	Ubiquinone and other terpenoid-quinone biosynthesis	3
bra00941	Flavonoid biosynthesis	3
bra00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	3
bra00360	Phenylalanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	3
vvi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04120	Ubiquitin mediated proteolysis	3
vvi04141	Protein processing in endoplasmic reticulum	2
vvi00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00900	Terpenoid backbone biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00900	Terpenoid backbone biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00941	Flavonoid biosynthesis	3
cit02010	ABC transporters	3
cit04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00073	Cutin, suberine and wax biosynthesis	2
cit00071	Fatty acid degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04016	MAPK signaling pathway - plant	6
sly04075	Plant hormone signal transduction	5
sly00270	Cysteine and methionine metabolism	2
sly00670	One carbon pool by folate	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	5
sly03060	Protein export	2
sly04145	Phagosome	2
sly03008	Ribosome biogenesis in eukaryotes	2
sly03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	3
sot04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	9
nta04075	Plant hormone signal transduction	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04016	MAPK signaling pathway - plant	2
osa04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00910	Nitrogen metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00520	Amino sugar and nucleotide sugar metabolism	3
sbi01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	4
bdi04016	MAPK signaling pathway - plant	3
bdi04626	Plant-pathogen interaction	2

Expression

Expression pattern

Entrez Gene ID^*

7492425

7458128

7467535

100798994

100791954

100787100

11425082

25484399

25483016

824721

838683

843983

103828491

103830018

103832112

100242785

100245113

100261537

107898895

121226550

107944988

111210254

106422551

106428954

102610565

102607186

102622208

101268318

101252037

101244283

102604198

102585675

102600277

107824415

107811115

107767128

4330508

4332382

9271930

100284459

100280097

103638353

123082528

123095556

123405116

123446795

8054840

8073832

8155648

100821604

100832651

100837302

The preparation time of this page was 0.1 [sec].


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	hvu	sbi	bdi	cre	tae
Paralog	5	2	3	3	3	3	3	3	3	3	3	3	3	3	3	3	1	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7492425 (ppo-r.4 coexpression data)

Top 50 enrichment test to 7492425 (ppo-r.4 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**