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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   18102012   uncharacterized LOC18102012 
 ppo-r.4   18102012   uncharacterized LOC18102012 
 ppo-u.5   7465090   transcription initiation factor IIA large subunit 
 gma-u.5   100820439   transcription initiation factor IIA subunit 1 
 gma-u.5   100818285   TFIIA-alpha and beta-like factor 
 mtr-u.5   11416101   transcription initiation factor IIA large subunit 
 ath-u.5   AT1G07470   Transcription factor IIA, alpha/beta subunit 
 ath-u.5   AT1G07480   Transcription factor IIA, alpha/beta subunit 
 bra-r.6   103836440   transcription initiation factor IIA large subunit 
 bra-r.6   103843455   transcription initiation factor IIA large subunit 
 vvi-u.5   100241598   uncharacterized LOC100241598 
 ghi-r.1   107954225   transcription initiation factor IIA large subunit 
 ghi-r.1   107959139   transcription initiation factor IIA large subunit 
 ghi-r.1   107960013   transcription initiation factor IIA large subunit 
 bna-r.1   106420187   transcription initiation factor IIA large subunit 
 bna-r.1   106362246   transcription initiation factor IIA large subunit-like 
 bna-r.1   111209112   transcription initiation factor IIA large subunit-like 
 cit-r.1   102607884   uncharacterized LOC102607884 
 sly-u.5   101244295   transcription initiation factor IIA large subunit 
 sot-r.1   102601502   transcription initiation factor IIA large subunit 
 nta-r.1   107821560   transcription initiation factor IIA large subunit-like 
 nta-r.1   107829857   transcription initiation factor IIA large subunit 
 osa-u.5   4338303   uncharacterized LOC4338303 
 zma-u.5   100282138   Transcription factor IIA alpha/beta subunit 
 zma-u.5   100282260   transcription factor/ transcription initiation factor 
 tae-r.2   123042401   transcription initiation factor IIA large subunit 
 hvu-r.1   123398837   transcription initiation factor IIA subunit 1-like 
 hvu-r.1   123428974   transcription initiation factor IIA large subunit-like 
 sbi-r.1   8071743   transcription initiation factor IIA subunit 1 
 bdi-r.1   100827776   transcription initiation factor IIA subunit 1 
 cre-r.1   CHLRE_14g625200v5   uncharacterized protein 

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Top 50 coexpressed genes to 18102012 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 18102012 (ppo-u.5 coexpression data)

CoexMap"18102012"


ppoLOC18102012 | Entrez gene ID : 18102012    
Species ppo gma mtr ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 2 1 2 2 1 3 3 1 1 1 2 1 2 1 2 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03022 [list] [network] Basal transcription factors (55 genes)
GO BP
GO:0006367 [list] [network] transcription initiation at RNA polymerase II promoter  (36 genes)  IEA  
GO:0006366 [list] [network] transcription by RNA polymerase II  (78 genes)  IEA  
GO CC
GO:0005672 [list] [network] transcription factor TFIIA complex  (3 genes)  IEA  
GO MF
Protein XP_006379027.3 [sequence] [blastp]
XP_024464643.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 1,  cysk 1  (predict for XP_006379027.3)
cyto 5,  nucl 3,  cysk 1,  nucl_plas 1  (predict for XP_024464643.2)
Subcellular
localization
TargetP
other 7  (predict for XP_006379027.3)
other 7  (predict for XP_024464643.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
18102012
ppo-r.4
for
18102012
ppo-u.5
for
7465090
gma-u.5
for
100820439
gma-u.5
for
100818285
mtr-u.5
for
11416101
ath-u.5
for
AT1G07470
ath-u.5
for
AT1G07480
bra-r.6
for
103836440
bra-r.6
for
103843455
vvi-u.5
for
100241598
ghi-r.1
for
107954225
ghi-r.1
for
107959139
ghi-r.1
for
107960013
bna-r.1
for
106420187
bna-r.1
for
106362246
bna-r.1
for
111209112
cit-r.1
for
102607884
sly-u.5
for
101244295
sot-r.1
for
102601502
nta-r.1
for
107821560
nta-r.1
for
107829857
osa-u.5
for
4338303
zma-u.5
for
100282138
zma-u.5
for
100282260
tae-r.2
for
123042401
hvu-r.1
for
123398837
hvu-r.1
for
123428974
sbi-r.1
for
8071743
bdi-r.1
for
100827776
cre-r.1
for
CHLRE_14g625200v5


Ortholog ID: 4457
Species ppo ppo gma gma gma mtr ath ath bra bra vvi ghi ghi ghi bna bna bna cit sly sot nta nta osa zma zma tae tae hvu hvu sbi bdi cre
Symbol LOC18102012 LOC7465090 LOC100818285 LOC100800601 LOC100795010 LOC11416101 AT1G07470 AT1G07480 LOC103836440 LOC103843455 LOC100241598 LOC107954225 LOC107959139 LOC107960013 LOC106362246 LOC111209112 LOC106397698 LOC102607884 LOC101244295 LOC102601502 LOC107821560 LOC107829857 LOC4338303 LOC100282138 LOC100282260 LOC123042401 LOC123117189 LOC123398837 LOC123428974 LOC8071743 LOC100827776 CHLRE_14g625200v5
Function* uncharacterized LOC18102012 transcription initiation factor IIA large subunit TFIIA-alpha and beta-like factor transcription initiation factor IIA large subunit transcription initiation factor IIA subunit 1 transcription initiation factor IIA large subunit Transcription factor IIA, alpha/beta subunit Transcription factor IIA, alpha/beta subunit transcription initiation factor IIA large subunit transcription initiation factor IIA large subunit uncharacterized LOC100241598 transcription initiation factor IIA large subunit transcription initiation factor IIA large subunit transcription initiation factor IIA large subunit transcription initiation factor IIA large subunit-like transcription initiation factor IIA large subunit-like transcription initiation factor IIA large subunit uncharacterized LOC102607884 transcription initiation factor IIA large subunit transcription initiation factor IIA large subunit transcription initiation factor IIA large subunit-like transcription initiation factor IIA large subunit uncharacterized LOC4338303 Transcription factor IIA alpha/beta subunit transcription factor/ transcription initiation factor transcription initiation factor IIA large subunit transcription initiation factor IIA subunit 1 transcription initiation factor IIA subunit 1-like transcription initiation factor IIA large subunit-like transcription initiation factor IIA subunit 1 transcription initiation factor IIA subunit 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03022 Basal transcription factors 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03022 Basal transcription factors 2
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 3
gma00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 4
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 3
mtr01230 Biosynthesis of amino acids 3
mtr04141 Protein processing in endoplasmic reticulum 2
mtr00010 Glycolysis / Gluconeogenesis 2
mtr00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 5
bra03022 Basal transcription factors 2
bra03015 mRNA surveillance pathway 2
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
vvi04144 Endocytosis 2
vvi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 9
ghi03013 Nucleocytoplasmic transport 7
ghi03015 mRNA surveillance pathway 7
ghi03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 9
ghi03013 Nucleocytoplasmic transport 5
ghi03015 mRNA surveillance pathway 5
ghi03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 9
ghi03013 Nucleocytoplasmic transport 7
ghi03015 mRNA surveillance pathway 7
ghi03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 3
cit03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 5
nta03040 Spliceosome 4
nta03013 Nucleocytoplasmic transport 3
nta04120 Ubiquitin mediated proteolysis 2
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 5
nta03040 Spliceosome 4
nta03013 Nucleocytoplasmic transport 3
nta04120 Ubiquitin mediated proteolysis 2
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03022 Basal transcription factors 2
osa03018 RNA degradation 2
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
zma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00010 Glycolysis / Gluconeogenesis 2
zma03022 Basal transcription factors 2
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 5
tae00190 Oxidative phosphorylation 5
tae04145 Phagosome 5
tae03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 3
hvu03013 Nucleocytoplasmic transport 2
hvu03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 5
sbi03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 18102012 7465090 100818285 100800601 100795010 11416101 837259 837262 103836440 103843455 100241598 107954225 107959139 107960013 106362246 111209112 106397698 102607884 101244295 102601502 107821560 107829857 4338303 100282138 100282260 123042401 123117189 123398837 123428974 8071743 100827776 5718400
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