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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7454402   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 ppo-r.4   7454402   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 ppo-m.4   7454402   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 ppo-u.5   18095412   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 gma-u.5   100820010   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 gma-u.5   100797533   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 mtr-u.5   25487194   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 mtr-u.5   25479856   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 bra-r.6   103872487   probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 3 
 vvi-u.5   100265802   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 vvi-u.5   100255459   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 ghi-r.1   107891731   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 ghi-r.1   107891734   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 ghi-r.1   107904029   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 bna-r.1   106397904   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 
 bna-r.1   106365560   probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 3 
 bna-r.1   106345849   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 cit-r.1   102619985   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 cit-r.1   102616341   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 
 sly-u.5   101255062   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 
 sly-u.5   100134910   trehalose-phosphate synthase 1 
 sot-r.1   102578346   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 
 sot-r.1   102588468   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 nta-r.1   107810646   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 
 nta-r.1   107787237   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 nta-r.1   107793944   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 osa-u.5   9266089   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 zma-u.5   100381759   uncharacterized LOC100381759 
 zma-u.5   100170239   trehalose-6-phosphate synthase 
 tae-r.2   100270668   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 tae-r.2   123063345   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 tae-r.2   123140281   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 hvu-r.1   123447061   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 
 hvu-r.1   123407826   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 
 sbi-r.1   8082983   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 bdi-r.1   100828278   alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 
 cre-r.1   CHLRE_16g686200v5   uncharacterized protein 

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Top 50 coexpressed genes to 7454402 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7454402 (ppo-u.5 coexpression data)

CoexMap"7454402"


ppoLOC7454402 | Entrez gene ID : 7454402    
Species ppo gma mtr bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre ath
Paralog 4 2 2 1 2 3 3 2 2 2 3 1 2 3 2 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00500 [list] [network] Starch and sucrose metabolism (188 genes)
GO BP
GO:0005992 [list] [network] trehalose biosynthetic process  (22 genes)  IEA  
GO CC
GO:0005829 [list] [network] cytosol  (1141 genes)  IEA  
GO MF
GO:0003825 [list] [network] alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity  (3 genes)  IEA  
Protein XP_024437004.1 [sequence] [blastp]
XP_024437005.1 [sequence] [blastp]
XP_024437006.1 [sequence] [blastp]
XP_024437007.1 [sequence] [blastp]
XP_024437008.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  mito 3,  chlo 2,  cyto_nucl 2,  cysk_nucl 2,  nucl_plas 2  (predict for XP_024437004.1)
nucl 4,  mito 3,  chlo 2,  cyto_nucl 2,  cysk_nucl 2,  nucl_plas 2  (predict for XP_024437005.1)
nucl 4,  mito 3,  chlo 2,  cyto_nucl 2,  cysk_nucl 2,  nucl_plas 2  (predict for XP_024437006.1)
nucl 4,  mito 3,  chlo 2,  cyto_nucl 2,  cysk_nucl 2,  nucl_plas 2  (predict for XP_024437007.1)
nucl 4,  mito 3,  chlo 2,  cyto_nucl 2,  cysk_nucl 2,  nucl_plas 2  (predict for XP_024437008.1)
Subcellular
localization
TargetP
other 5,  mito 3  (predict for XP_024437004.1)
other 5,  mito 3  (predict for XP_024437005.1)
other 5,  mito 3  (predict for XP_024437006.1)
other 5,  mito 3  (predict for XP_024437007.1)
other 5,  mito 3  (predict for XP_024437008.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7454402
ppo-r.4
for
7454402
ppo-m.4
for
7454402
ppo-u.5
for
18095412
gma-u.5
for
100820010
gma-u.5
for
100797533
mtr-u.5
for
25487194
mtr-u.5
for
25479856
bra-r.6
for
103872487
vvi-u.5
for
100265802
vvi-u.5
for
100255459
ghi-r.1
for
107891731
ghi-r.1
for
107891734
ghi-r.1
for
107904029
bna-r.1
for
106397904
bna-r.1
for
106365560
bna-r.1
for
106345849
cit-r.1
for
102619985
cit-r.1
for
102616341
sly-u.5
for
101255062
sly-u.5
for
100134910
sot-r.1
for
102578346
sot-r.1
for
102588468
nta-r.1
for
107810646
nta-r.1
for
107787237
nta-r.1
for
107793944
osa-u.5
for
9266089
zma-u.5
for
100381759
zma-u.5
for
100170239
tae-r.2
for
100270668
tae-r.2
for
123063345
tae-r.2
for
123140281
hvu-r.1
for
123447061
hvu-r.1
for
123407826
sbi-r.1
for
8082983
bdi-r.1
for
100828278
cre-r.1
for
CHLRE_16g686200v5


Ortholog ID: 2355
Species ppo ppo gma gma mtr mtr bra bra vvi vvi ghi ghi ghi bna bna bna cit cit sly sly sot sot nta nta nta osa zma zma tae tae tae hvu hvu sbi bdi cre
Symbol LOC7454402 LOC18095412 LOC100820010 LOC100789554 LOC25487194 LOC25479856 LOC103853134 LOC103832336 LOC100265802 LOC100255459 LOC107891731 LOC107891734 LOC107904029 LOC106365560 LOC106354550 LOC106354691 LOC102619985 LOC102616341 LOC101255062 LOC100134910 LOC102578346 LOC102588468 LOC107810646 LOC107793944 LOC107809478 LOC9266089 LOC100381759 LOC100170239 LOC100270668 LOC123063345 LOC123180210 LOC123447061 LOC123407826 LOC8082983 LOC100828278 CHLRE_16g686200v5
Function* alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 3 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like trehalose-phosphate synthase 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 uncharacterized LOC100381759 trehalose-6-phosphate synthase alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 2 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00966 Glucosinolate biosynthesis 3
bra01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 5
ghi02010 ABC transporters 3
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 5
ghi02010 ABC transporters 3
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 7
sot00520 Amino sugar and nucleotide sugar metabolism 2
sot01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00260 Glycine, serine and threonine metabolism 6
nta00630 Glyoxylate and dicarboxylate metabolism 6
nta01200 Carbon metabolism 6
nta00500 Starch and sucrose metabolism 6
nta00220 Arginine biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 6
nta00010 Glycolysis / Gluconeogenesis 2
nta00030 Pentose phosphate pathway 2
nta00052 Galactose metabolism 2
nta00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00260 Glycine, serine and threonine metabolism 6
nta00630 Glyoxylate and dicarboxylate metabolism 6
nta01200 Carbon metabolism 6
nta00500 Starch and sucrose metabolism 6
nta00220 Arginine biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04814 Motor proteins 2
osa00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 9
zma00500 Starch and sucrose metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01200 Carbon metabolism 6
zma01230 Biosynthesis of amino acids 5
zma00710 Carbon fixation by Calvin cycle 5
zma00030 Pentose phosphate pathway 3
zma00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00908 Zeatin biosynthesis 3
tae00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 3
tae00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 7
hvu00020 Citrate cycle (TCA cycle) 6
hvu01210 2-Oxocarboxylic acid metabolism 5
hvu00785 Lipoic acid metabolism 3
hvu01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00906 Carotenoid biosynthesis 3
sbi00270 Cysteine and methionine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 7454402 18095412 100820010 100789554 25487194 25479856 103853134 103832336 100265802 100255459 107891731 107891734 107904029 106365560 106354550 106354691 102619985 102616341 101255062 100134910 102578346 102588468 107810646 107793944 107809478 9266089 100381759 100170239 100270668 123063345 123180210 123447061 123407826 8082983 100828278 5717648
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