ATTED-II : GeneCoexpression result

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	7455688	pentatricopeptide repeat-containing protein At5g48910
ppo-r.4	7455688	pentatricopeptide repeat-containing protein At5g48910
ppo-m.4	7455688	pentatricopeptide repeat-containing protein At5g48910
gma-u.5	100812343	pentatricopeptide repeat-containing protein At5g48910
ath-u.5	LPA66	Pentatricopeptide repeat (PPR) superfamily protein
bra-r.6	103875002	pentatricopeptide repeat-containing protein At5g48910
vvi-u.5	100261359	pentatricopeptide repeat-containing protein At5g48910
ghi-r.1	107922892	pentatricopeptide repeat-containing protein At5g48910
ghi-r.1	107922939	pentatricopeptide repeat-containing protein At5g48910
bna-r.1	106348894	pentatricopeptide repeat-containing protein At5g48910-like
bna-r.1	106411493	pentatricopeptide repeat-containing protein At5g48910-like
cit-r.1	102624125	pentatricopeptide repeat-containing protein At5g48910

Annotation

functional annotation

Function

pentatricopeptide repeat-containing protein At5g48910

KEGG

GO BP

GO:0009451 [list] [network] RNA modification

(384 genes)

IEA

GO CC

GO MF

GO:0008270 [list] [network] zinc ion binding	(777 genes)	IEA
GO:0003723 [list] [network] RNA binding	(1480 genes)	IEA
GO:0005515 [list] [network] protein binding	(4916 genes)	IEA

Protein

XP_002320601.3 [sequence] [blastp]
XP_052302704.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 5, mito 3, cyto 1, E.R. 1, pero 1, cyto_pero 1, cyto_E.R. 1	(predict for XP_002320601.3)
chlo 5, mito 2, pero 1, cyto 1, E.R. 1, cyto_E.R. 1	(predict for XP_052302704.1)

Subcellular
localization
TargetP

chlo 5, other 4	(predict for XP_002320601.3)
chlo 5, other 3	(predict for XP_052302704.1)

Gene expression

All samples

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 7455688	ppo-r.4 for 7455688	ppo-m.4 for 7455688	gma-u.5 for 100812343	ath-u.5 for LPA66	bra-r.6 for 103875002	vvi-u.5 for 100261359	ghi-r.1 for 107922892	ghi-r.1 for 107922939	bna-r.1 for 106348894	bna-r.1 for 106411493	cit-r.1 for 102624125