ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	7477670	AP-2 complex subunit sigma
ppo-r.4	7477670	AP-2 complex subunit sigma
ppo-m.4	7477670	AP-2 complex subunit sigma
ppo-u.5	7479681	AP-2 complex subunit sigma
gma-u.5	100500378	uncharacterized LOC100500378
gma-u.5	100500054	uncharacterized LOC100500054
mtr-u.5	11419257	AP-2 complex subunit sigma
ath-u.5	AT1G47830	SNARE-like superfamily protein
bra-r.6	103843921	AP-2 complex subunit sigma
bra-r.6	103839297	AP-2 complex subunit sigma
vvi-u.5	100260819	AP-2 complex subunit sigma
vvi-u.5	100260827	AP-2 complex subunit sigma
ghi-r.1	107940705	AP-2 complex subunit sigma
ghi-r.1	107938106	AP-2 complex subunit sigma
bna-r.1	111207282	AP-2 complex subunit sigma
bna-r.1	125596838	AP-2 complex subunit sigma-like
bna-r.1	106449699	AP-2 complex subunit sigma
cit-r.1	102626785	AP-2 complex subunit sigma
sly-u.5	101261916	AP-2 complex subunit sigma
sot-r.1	102595611	AP-2 complex subunit sigma
nta-r.1	107768459	AP-2 complex subunit sigma
nta-r.1	107808731	AP-2 complex subunit sigma
nta-r.1	107778170	AP-2 complex subunit sigma-like
osa-u.5	4351755	AP-2 complex subunit sigma
zma-u.5	103650611	AP-2 complex subunit sigma-like
tae-r.2	123119959	AP-2 complex subunit sigma
tae-r.2	123110959	AP-2 complex subunit sigma
hvu-r.1	123396586	AP-2 complex subunit sigma
sbi-r.1	8084806	AP-2 complex subunit sigma
sbi-r.1	8076921	AP-2 complex subunit sigma
bdi-r.1	100835474	AP-2 complex subunit sigma
bdi-r.1	100846755	AP-2 complex subunit sigma
cre-r.1	CHLRE_07g324600v5	uncharacterized protein

Top 50 coexpressed genes to 7477670 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 7477670 (ppo-u.5 coexpression data)

CoexMap"7477670"

[Cytoscape]

Annotation

functional annotation

KEGG

pop04144 [list] [network] Endocytosis (195 genes)

GO BP

GO:0072583 [list] [network] clathrin-dependent endocytosis	(41 genes)	IEA
GO:0015031 [list] [network] protein transport	(471 genes)	IEA

GO CC

GO:0030122 [list] [network] AP-2 adaptor complex	(4 genes)	IEA
GO:0043231 [list] [network] intracellular membrane-bounded organelle	(6743 genes)	IEA

GO MF

GO:0035615 [list] [network] clathrin adaptor activity

(9 genes)

IEA

Protein

XP_002306925.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 3, cyto 3, mito 2, cyto_mito 1, nucl 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1

(predict for XP_002306925.1)

Subcellular
localization
TargetP

mito 8, other 5

(predict for XP_002306925.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 7477670	ppo-r.4 for 7477670	ppo-m.4 for 7477670	ppo-u.5 for 7479681	gma-u.5 for 100500378	gma-u.5 for 100500054	mtr-u.5 for 11419257	ath-u.5 for AT1G47830	bra-r.6 for 103843921	bra-r.6 for 103839297	vvi-u.5 for 100260819	vvi-u.5 for 100260827	ghi-r.1 for 107940705	ghi-r.1 for 107938106	bna-r.1 for 111207282	bna-r.1 for 125596838	bna-r.1 for 106449699	cit-r.1 for 102626785	sly-u.5 for 101261916	sot-r.1 for 102595611	nta-r.1 for 107768459	nta-r.1 for 107808731	nta-r.1 for 107778170	osa-u.5 for 4351755	zma-u.5 for 103650611	tae-r.2 for 123119959	tae-r.2 for 123110959	hvu-r.1 for 123396586	sbi-r.1 for 8084806	sbi-r.1 for 8076921	bdi-r.1 for 100835474	bdi-r.1 for 100846755	cre-r.1 for CHLRE_07g324600v5

Ortholog

Ortholog ID: 6151

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

AP-2 complex subunit sigma

uncharacterized LOC100500378

uncharacterized LOC100500054

AP-2 complex subunit sigma

SNARE-like superfamily protein

AP-2 complex subunit sigma

AP-2 complex subunit sigma-like

AP-2 complex subunit sigma

AP-2 complex subunit sigma-like

AP-2 complex subunit sigma

AP-2 complex subunit sigma-like

AP-2 complex subunit sigma

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	7
ppo00190	Oxidative phosphorylation	5
ppo04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	4
ppo00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	2
gma04120	Ubiquitin mediated proteolysis	2
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	2
gma04016	MAPK signaling pathway - plant	2
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04144	Endocytosis	4
mtr04626	Plant-pathogen interaction	4
mtr04016	MAPK signaling pathway - plant	3
mtr04070	Phosphatidylinositol signaling system	3
mtr04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04626	Plant-pathogen interaction	2
ath04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3
bra04145	Phagosome	2
bra00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	4
bra04145	Phagosome	3
bra03040	Spliceosome	3
bra04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2
vvi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04141	Protein processing in endoplasmic reticulum	2
vvi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04130	SNARE interactions in vesicular transport	2
ghi04144	Endocytosis	2
ghi00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04130	SNARE interactions in vesicular transport	2
ghi04144	Endocytosis	2
ghi00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00190	Oxidative phosphorylation	3
bna04145	Phagosome	3
bna04144	Endocytosis	2
bna04142	Lysosome	2
bna04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04144	Endocytosis	5
bna04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04144	Endocytosis	5
bna04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03060	Protein export	2
cit04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00510	N-Glycan biosynthesis	3
sly04142	Lysosome	3
sly04141	Protein processing in endoplasmic reticulum	3
sly00190	Oxidative phosphorylation	2
sly04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	3
sot00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	4
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04144	Endocytosis	2
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	4
tae04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	7
tae04517	IgSF CAM signaling	5
tae05100	Bacterial invasion of epithelial cells	4
tae04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	3
hvu04145	Phagosome	3
hvu00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	3
bdi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	2
bdi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00190	Oxidative phosphorylation	2
cre04145	Phagosome	2
cre04144	Endocytosis	2

Expression

Expression pattern

Entrez Gene ID^*

7477670

7479681

100500378

100500054

11419257

841199

103843921

103839297

100260819

100260827

107940705

107938106

106449699

106435181

106402641

102626785

101261916

102595611

107768459

107808731

107778170

4351755

103650611

123119959

123110959

123396586

8084806

8076921

100835474

100846755

5726434

The preparation time of this page was 0.2 [sec].


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	1	1	2	2	2	3	1	1	1	3	1	1	2	1	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7477670 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7477670 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**