ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	7477964	uncharacterized LOC7477964
ppo-r.4	7477964	uncharacterized LOC7477964
ppo-u.5	7489718	uncharacterized LOC7489718
ppo-u.5	7479285	uncharacterized LOC7479285
gma-u.5	100809143	50S ribosomal protein L25
gma-u.5	100802599	50S ribosomal protein L25
gma-u.5	100791230	50S ribosomal protein L25
mtr-u.5	11432645	50S ribosomal protein L25
mtr-u.5	11419020	50S ribosomal protein L25
ath-u.5	AT4G23620	Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein
ath-u.5	AT5G66860	Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein
bra-r.6	103834959	50S ribosomal protein L25
bra-r.6	103829558	50S ribosomal protein L25
bra-r.6	103861282	50S ribosomal protein L25
vvi-u.5	100255348	uncharacterized LOC100255348
vvi-u.5	100242725	uncharacterized LOC100242725
vvi-u.5	100854002	uncharacterized LOC100854002
ghi-r.1	107945300	50S ribosomal protein L25
ghi-r.1	107942029	50S ribosomal protein L25
ghi-r.1	107938549	50S ribosomal protein L25
bna-r.1	125583807	50S ribosomal protein L25-like
bna-r.1	106441366	50S ribosomal protein L25
bna-r.1	106390382	50S ribosomal protein L25
cit-r.1	102608950	uncharacterized LOC102608950
cit-r.1	102609476	uncharacterized LOC102609476
sly-u.5	101250850	uncharacterized LOC101250850
sly-u.5	101243850	uncharacterized LOC101243850
sot-r.1	102591158	50S ribosomal protein L25
sot-r.1	102596008	50S ribosomal protein L25
sot-r.1	102598427	50S ribosomal protein L25-like
nta-r.1	107822762	uncharacterized LOC107822762
nta-r.1	107819634	uncharacterized LOC107819634
nta-r.1	107812190	uncharacterized LOC107812190
osa-u.5	4326383	uncharacterized LOC4326383
osa-u.5	4338257	uncharacterized LOC4338257
osa-u.5	9272292	uncharacterized LOC9272292
zma-u.5	100274018	Ribosomal protein L25/Gln-tRNA synthetase anti-codon-binding domain
zma-u.5	100283916	uncharacterized LOC100283916
tae-r.2	123061394	50S ribosomal protein L25
tae-r.2	123078493	50S ribosomal protein L25
tae-r.2	123070037	50S ribosomal protein L25
hvu-r.1	123447794	50S ribosomal protein L25
hvu-r.1	123443808	50S ribosomal protein L25
sbi-r.1	8062511	50S ribosomal protein L25
sbi-r.1	8082181	50S ribosomal protein L25
bdi-r.1	100833390	50S ribosomal protein L25
bdi-r.1	100829366	50S ribosomal protein L25
cre-r.1	CHLRE_02g081450v5	uncharacterized protein

Top 50 coexpressed genes to 7477964 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 7477964 (ppo-u.5 coexpression data)

CoexMap"7477964"

[Cytoscape]

Annotation

functional annotation

KEGG

pop03010 [list] [network] Ribosome (698 genes)

GO BP

GO:0006412 [list] [network] translation

(598 genes)

IEA

GO CC

GO:0022625 [list] [network] cytosolic large ribosomal subunit	(171 genes)	IEA
GO:0005840 [list] [network] ribosome	(453 genes)	IEA

GO MF

GO:0008097 [list] [network] 5S rRNA binding	(16 genes)	IEA
GO:0003735 [list] [network] structural constituent of ribosome	(439 genes)	IEA

Protein

XP_002310742.3 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, nucl 2, mito 1

(predict for XP_002310742.3)

Subcellular
localization
TargetP

mito 7, chlo 3

(predict for XP_002310742.3)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 7477964	ppo-r.4 for 7477964	ppo-u.5 for 7489718	ppo-u.5 for 7479285	gma-u.5 for 100809143	gma-u.5 for 100802599	gma-u.5 for 100791230	mtr-u.5 for 11432645	mtr-u.5 for 11419020	ath-u.5 for AT4G23620	ath-u.5 for AT5G66860	bra-r.6 for 103834959	bra-r.6 for 103829558	bra-r.6 for 103861282	vvi-u.5 for 100255348	vvi-u.5 for 100242725	vvi-u.5 for 100854002	ghi-r.1 for 107945300	ghi-r.1 for 107942029	ghi-r.1 for 107938549	bna-r.1 for 125583807	bna-r.1 for 106441366	bna-r.1 for 106390382	cit-r.1 for 102608950	cit-r.1 for 102609476	sly-u.5 for 101250850	sly-u.5 for 101243850	sot-r.1 for 102591158	sot-r.1 for 102596008	sot-r.1 for 102598427	nta-r.1 for 107822762	nta-r.1 for 107819634	nta-r.1 for 107812190	osa-u.5 for 4326383	osa-u.5 for 4338257	osa-u.5 for 9272292	zma-u.5 for 100274018	zma-u.5 for 100283916	tae-r.2 for 123061394	tae-r.2 for 123078493	tae-r.2 for 123070037	hvu-r.1 for 123447794	hvu-r.1 for 123443808	sbi-r.1 for 8062511	sbi-r.1 for 8082181	bdi-r.1 for 100833390	bdi-r.1 for 100829366	cre-r.1 for CHLRE_02g081450v5

Ortholog

Ortholog ID: 2748

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC7477964

uncharacterized LOC7489718

uncharacterized LOC7479285

50S ribosomal protein L25

Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein

50S ribosomal protein L25

uncharacterized LOC100255348

uncharacterized LOC100242725

uncharacterized LOC100854002

50S ribosomal protein L25

uncharacterized LOC102608950

uncharacterized LOC102609476

uncharacterized LOC101250850

uncharacterized LOC101243850

50S ribosomal protein L25

50S ribosomal protein L25-like

uncharacterized LOC107822762

uncharacterized LOC107819634

uncharacterized LOC107812190

uncharacterized LOC4326383

uncharacterized LOC4338257

uncharacterized LOC9272292

Ribosomal protein L25/Gln-tRNA synthetase anti-codon-binding domain

uncharacterized LOC100283916

50S ribosomal protein L25

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	6
ppo03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	2
gma03013	Nucleocytoplasmic transport	2
gma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	13
gma03008	Ribosome biogenesis in eukaryotes	5
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	3
gma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2
ath03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	12
bra03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	9
bra00250	Alanine, aspartate and glutamate metabolism	2
bra01230	Biosynthesis of amino acids	2
bra03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	11
bra00970	Aminoacyl-tRNA biosynthesis	2
bra01230	Biosynthesis of amino acids	2
bra03018	RNA degradation	2
bra01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	2
vvi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00190	Oxidative phosphorylation	4
vvi03010	Ribosome	3
vvi00020	Citrate cycle (TCA cycle)	2
vvi01200	Carbon metabolism	2
vvi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	6
ghi04626	Plant-pathogen interaction	2
ghi03030	DNA replication	2
ghi03430	Mismatch repair	2
ghi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04626	Plant-pathogen interaction	4
bna03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04626	Plant-pathogen interaction	4
bna03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	6
cit03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	4
cit03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	3
sot03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	7
nta03008	Ribosome biogenesis in eukaryotes	4
nta03040	Spliceosome	3
nta00230	Purine metabolism	2
nta01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	6
nta04626	Plant-pathogen interaction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	6
nta04626	Plant-pathogen interaction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	9
osa03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	3
osa03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	6
osa00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	3
zma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	10
tae03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	9
hvu03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	5
hvu03030	DNA replication	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	6
bdi03008	Ribosome biogenesis in eukaryotes	3
bdi00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03010	Ribosome	6

Expression

Expression pattern

Entrez Gene ID^*

7477964

7489718

7479285

100809143

100802599

100779285

11432645

11419020

828462

836820

103834959

103829558

103861282

100255348

100242725

100854002

107945300

107942029

107933212

106390382

106346574

106358349

102608950

102609476

101250850

101243850

102591158

102596008

102598427

107822762

107819634

107812190

4326383

4338257

9272292

100274018

100283916

123078493

123070037

123096148

123447794

123443808

8062511

8082181

100833390

100829366

5727309

The preparation time of this page was 0.4 [sec].


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	2	2	3	3	3	3	2	2	3	3	3	2	3	2	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7477964 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7477964 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**