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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7478577   capsanthin/capsorubin synthase, chromoplastic 
 ppo-r.4   7478577   capsanthin/capsorubin synthase, chromoplastic 
 ppo-m.4   7478577   capsanthin/capsorubin synthase, chromoplastic 
 ppo-u.5   18098070   capsanthin/capsorubin synthase, chromoplastic 
 gma-u.5   100795360   capsanthin/capsorubin synthase, chromoplastic 
 mtr-u.5   11408134   capsanthin/capsorubin synthase, chromoplastic 
 mtr-u.5   11417046   neoxanthin synthase, chloroplastic 
 vvi-u.5   100246737   capsanthin/capsorubin synthase, chromoplast 
 ghi-r.1   107889184   capsanthin/capsorubin synthase, chromoplastic 
 ghi-r.1   107892904   capsanthin/capsorubin synthase, chromoplastic 
 cit-r.1   102625209   capsanthin/capsorubin synthase, chromoplastic-like 
 sly-u.5   NSY   lycopene beta-cyclase, chromoplastic 
 sot-r.1   102601215   neoxanthin synthase, chloroplastic 
 nta-r.1   107784989   neoxanthin synthase, chloroplastic-like 
 nta-r.1   107802057   neoxanthin synthase, chloroplastic 

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Top 50 coexpressed genes to 7478577 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7478577 (ppo-u.5 coexpression data)

CoexMap"7478577"


ppoLOC7478577 | Entrez gene ID : 7478577    
Species ppo gma mtr vvi ghi cit sly sot nta cre bra ath hvu bna tae bdi osa zma sbi
Paralog 4 1 2 1 2 1 1 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00906 [list] [network] Carotenoid biosynthesis (54 genes)
GO BP
GO:0016117 [list] [network] carotenoid biosynthetic process  (23 genes)  IEA  
GO CC
GO MF
GO:0016705 [list] [network] oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen  (417 genes)  IEA  
Protein XP_002313611.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_002313611.2)
Subcellular
localization
TargetP
chlo 8  (predict for XP_002313611.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7478577
ppo-r.4
for
7478577
ppo-m.4
for
7478577
ppo-u.5
for
18098070
gma-u.5
for
100795360
mtr-u.5
for
11408134
mtr-u.5
for
11417046
vvi-u.5
for
100246737
ghi-r.1
for
107889184
ghi-r.1
for
107892904
cit-r.1
for
102625209
sly-u.5
for
NSY
sot-r.1
for
102601215
nta-r.1
for
107784989
nta-r.1
for
107802057


Ortholog ID: 14233
Species ppo ppo gma mtr mtr vvi ghi ghi cit sly sot nta nta
Symbol LOC7478577 LOC18098070 LOC100795360 LOC11408134 LOC11417046 LOC100246737 LOC107889184 LOC107892904 LOC102625209 NSY LOC102601215 LOC107784989 LOC107802057
Function* capsanthin/capsorubin synthase, chromoplastic capsanthin/capsorubin synthase, chromoplastic capsanthin/capsorubin synthase, chromoplastic capsanthin/capsorubin synthase, chromoplastic neoxanthin synthase, chloroplastic capsanthin/capsorubin synthase, chromoplast capsanthin/capsorubin synthase, chromoplastic capsanthin/capsorubin synthase, chromoplastic capsanthin/capsorubin synthase, chromoplastic-like lycopene beta-cyclase, chromoplastic neoxanthin synthase, chloroplastic neoxanthin synthase, chloroplastic-like neoxanthin synthase, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 4
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00510 N-Glycan biosynthesis 2
gma00940 Phenylpropanoid biosynthesis 2
gma00380 Tryptophan metabolism 2
gma00630 Glyoxylate and dicarboxylate metabolism 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00906 Carotenoid biosynthesis 9
mtr00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 7478577 18098070 100795360 11408134 11417046 100246737 107889184 107892904 102625209 543649 102601215 107784989 107802057
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