ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	7480010	peptidyl-prolyl cis-trans isomerase CYP63
ppo-r.4	7480010	peptidyl-prolyl cis-trans isomerase CYP63
ppo-m.4	7480010	peptidyl-prolyl cis-trans isomerase CYP63
ppo-u.5	7462976	peptidyl-prolyl cis-trans isomerase CYP95
ppo-u.5	7477866	peptidyl-prolyl cis-trans isomerase 1
ppo-u.5	7490647	peptidyl-prolyl cis-trans isomerase
gma-u.5	CYP3	peptidyl-prolyl cis-trans isomerase CYP3
gma-u.5	CYP2	peptidyl-prolyl cis-trans isomerase CYP2
gma-u.5	CYP1	peptidyl-prolyl cis-trans isomerase 1
mtr-u.5	25499177	peptidyl-prolyl cis-trans isomerase CYP63
mtr-u.5	11420866	peptidyl-prolyl cis-trans isomerase CYP95
mtr-u.5	11422523	peptidyl-prolyl cis-trans isomerase 1
ath-u.5	ROC3	rotamase CYP 3
ath-u.5	ROC1	rotamase CYP 1
ath-u.5	ROC5	rotamase cyclophilin 5
bra-r.6	103841514	peptidyl-prolyl cis-trans isomerase CYP19-3
bra-r.6	103837773	peptidyl-prolyl cis-trans isomerase
vvi-u.5	100267506	peptidyl-prolyl cis-trans isomerase-like
vvi-u.5	100264514	peptidyl-prolyl cis-trans isomerase CYP95
vvi-u.5	100261571	peptidyl-prolyl cis-trans isomerase CYP19-3
ghi-r.1	107928818	peptidyl-prolyl cis-trans isomerase 1
ghi-r.1	107922329	peptidyl-prolyl cis-trans isomerase
ghi-r.1	107920704	peptidyl-prolyl cis-trans isomerase CYP19-3
bna-r.1	111203325	peptidyl-prolyl cis-trans isomerase CYP95-like
bna-r.1	125604010	peptidyl-prolyl cis-trans isomerase CYP18-3
bna-r.1	111208740	peptidyl-prolyl cis-trans isomerase CYP19-3
cit-r.1	102614842	peptidyl-prolyl cis-trans isomerase CYP63
cit-r.1	CYP	peptidyl-prolyl cis-trans isomerase-like
cit-r.1	102615646	peptidyl-prolyl cis-trans isomerase CYP19-3
sly-u.5	101251734	peptidyl-prolyl cis-trans isomerase CYP19-2
sly-u.5	101254541	peptidyl-prolyl cis-trans isomerase
sly-u.5	CyP	cyclophilin
sot-r.1	102600807	peptidyl-prolyl cis-trans isomerase-like
sot-r.1	102586427	peptidyl-prolyl cis-trans isomerase-like
sot-r.1	102605090	peptidyl-prolyl cis-trans isomerase CYP19-3-like
nta-r.1	107807631	peptidyl-prolyl cis-trans isomerase-like
nta-r.1	107801011	peptidyl-prolyl cis-trans isomerase
nta-r.1	107795870	peptidyl-prolyl cis-trans isomerase-like
osa-u.5	4347920	peptidyl-prolyl cis-trans isomerase CYP19-3
osa-u.5	4328121	peptidyl-prolyl cis-trans isomerase
osa-u.5	4348134	peptidyl-prolyl cis-trans isomerase
zma-u.5	100282750	peptidyl-prolyl cis-trans isomerase
zma-u.5	100192934	Peptidyl-prolyl cis-trans isomerase CYP95
zma-u.5	100384625	uncharacterized LOC100384625
tae-r.2	123144352	peptidyl-prolyl cis-trans isomerase CYP95
tae-r.2	123143391	peptidyl-prolyl cis-trans isomerase
tae-r.2	123136927	peptidyl-prolyl cis-trans isomerase CYP95
hvu-r.1	123403267	peptidyl-prolyl cis-trans isomerase CYP95
hvu-r.1	123426151	peptidyl-prolyl cis-trans isomerase CYP63-like
hvu-r.1	123402860	peptidyl-prolyl cis-trans isomerase
sbi-r.1	8056817	peptidyl-prolyl cis-trans isomerase
sbi-r.1	8060736	peptidyl-prolyl cis-trans isomerase CYP63
sbi-r.1	8062274	peptidyl-prolyl cis-trans isomerase CYP19-3
bdi-r.1	100836372	peptidyl-prolyl cis-trans isomerase CYP63
bdi-r.1	100845871	peptidyl-prolyl cis-trans isomerase
bdi-r.1	100844579	peptidyl-prolyl cis-trans isomerase
cre-r.1	CHLRE_10g417500v5	uncharacterized protein
cre-r.1	CHLRE_01g002300v5	uncharacterized protein
cre-r.1	CHLRE_14g619300v5	uncharacterized protein

Top 50 coexpressed genes to 7480010 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 7480010 (ppo-u.5 coexpression data)

CoexMap"7480010"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0000413 [list] [network] protein peptidyl-prolyl isomerization	(45 genes)	IEA
GO:0006457 [list] [network] protein folding	(228 genes)	IEA

GO CC

GO MF

GO:0003755 [list] [network] peptidyl-prolyl cis-trans isomerase activity

(79 genes)

IEA

Protein

XP_024451743.2 [sequence] [blastp]
XP_024451744.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10	(predict for XP_024451743.2)
nucl 10	(predict for XP_024451744.2)

Subcellular
localization
TargetP

other 6, scret 6	(predict for XP_024451743.2)
other 6, scret 6	(predict for XP_024451744.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 7480010	ppo-r.4 for 7480010	ppo-m.4 for 7480010	ppo-u.5 for 7462976	ppo-u.5 for 7477866	ppo-u.5 for 7490647	gma-u.5 for CYP3	gma-u.5 for CYP2	gma-u.5 for CYP1	mtr-u.5 for 25499177	mtr-u.5 for 11420866	mtr-u.5 for 11422523	ath-u.5 for ROC3	ath-u.5 for ROC1	ath-u.5 for ROC5	bra-r.6 for 103841514	bra-r.6 for 103837773	vvi-u.5 for 100267506	vvi-u.5 for 100264514	vvi-u.5 for 100261571	ghi-r.1 for 107928818	ghi-r.1 for 107922329	ghi-r.1 for 107920704	bna-r.1 for 111203325	bna-r.1 for 125604010	bna-r.1 for 111208740	cit-r.1 for 102614842	cit-r.1 for CYP	cit-r.1 for 102615646	sly-u.5 for 101251734	sly-u.5 for 101254541	sly-u.5 for CyP	sot-r.1 for 102600807	sot-r.1 for 102586427	sot-r.1 for 102605090	nta-r.1 for 107807631	nta-r.1 for 107801011	nta-r.1 for 107795870	osa-u.5 for 4347920	osa-u.5 for 4328121	osa-u.5 for 4348134	zma-u.5 for 100282750	zma-u.5 for 100192934	zma-u.5 for 100384625	tae-r.2 for 123144352	tae-r.2 for 123143391	tae-r.2 for 123136927	hvu-r.1 for 123403267	hvu-r.1 for 123426151	hvu-r.1 for 123402860	sbi-r.1 for 8056817	sbi-r.1 for 8060736	sbi-r.1 for 8062274	bdi-r.1 for 100836372	bdi-r.1 for 100845871	bdi-r.1 for 100844579	cre-r.1 for CHLRE_10g417500v5	cre-r.1 for CHLRE_01g002300v5	cre-r.1 for CHLRE_14g619300v5

Ortholog

Ortholog ID: 517

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

LOC7462976

LOC7490647

LOC7472146

CYP1

CYP43

CYP27

LOC25499177

LOC11422523

LOC11432469

ROC3

ROC1

CyP

Function^*

peptidyl-prolyl cis-trans isomerase CYP95

peptidyl-prolyl cis-trans isomerase

peptidyl-prolyl cis-trans isomerase 1

peptidyl-prolyl cis-trans isomerase CYP43

peptidyl-prolyl cis-trans isomerase CYP27

peptidyl-prolyl cis-trans isomerase CYP63

peptidyl-prolyl cis-trans isomerase 1

peptidyl-prolyl cis-trans isomerase CYP95

rotamase CYP 3

rotamase CYP 1

Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein

peptidyl-prolyl cis-trans isomerase

peptidyl-prolyl cis-trans isomerase CYP18-3

peptidyl-prolyl cis-trans isomerase CYP95

peptidyl-prolyl cis-trans isomerase CYP19-3

peptidyl-prolyl cis-trans isomerase-like

peptidyl-prolyl cis-trans isomerase 1

peptidyl-prolyl cis-trans isomerase CYP95

peptidyl-prolyl cis-trans isomerase CYP19-3

peptidyl-prolyl cis-trans isomerase-like

peptidyl-prolyl cis-trans isomerase CYP19-3

peptidyl-prolyl cis-trans isomerase CYP63

peptidyl-prolyl cis-trans isomerase CYP19-3

peptidyl-prolyl cis-trans isomerase CYP95

peptidyl-prolyl cis-trans isomerase CYP19-2

peptidyl-prolyl cis-trans isomerase

cyclophilin

peptidyl-prolyl cis-trans isomerase-like

peptidyl-prolyl cis-trans isomerase CYP19-3-like

peptidyl-prolyl cis-trans isomerase-like

peptidyl-prolyl cis-trans isomerase

peptidyl-prolyl cis-trans isomerase CYP19-3

peptidyl-prolyl cis-trans isomerase

peptidyl-prolyl cis-trans isomerase CYP63

peptidyl-prolyl cis-trans isomerase

uncharacterized LOC100384625

uncharacterized LOC100274576

peptidyl-prolyl cis-trans isomerase

peptidyl-prolyl cis-trans isomerase CYP95

peptidyl-prolyl cis-trans isomerase CYP63-like

peptidyl-prolyl cis-trans isomerase-like

peptidyl-prolyl cis-trans isomerase CYP63

peptidyl-prolyl cis-trans isomerase CYP19-3

peptidyl-prolyl cis-trans isomerase CYP95

peptidyl-prolyl cis-trans isomerase CYP63

peptidyl-prolyl cis-trans isomerase

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00052	Galactose metabolism	2
ppo03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00190	Oxidative phosphorylation	7
ppo00020	Citrate cycle (TCA cycle)	3
ppo01200	Carbon metabolism	3
ppo00270	Cysteine and methionine metabolism	2
ppo00566	Sulfoquinovose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00710	Carbon fixation by Calvin cycle	8
gma01200	Carbon metabolism	8
gma00020	Citrate cycle (TCA cycle)	4
gma00270	Cysteine and methionine metabolism	4
gma00566	Sulfoquinovose metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	5
gma03250	Viral life cycle - HIV-1	4
gma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	7
ath00190	Oxidative phosphorylation	2
ath04016	MAPK signaling pathway - plant	2
ath04070	Phosphatidylinositol signaling system	2
ath04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04712	Circadian rhythm - plant	2
ath00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00620	Pyruvate metabolism	2
bra00710	Carbon fixation by Calvin cycle	2
bra01200	Carbon metabolism	2
bra00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03083	Polycomb repressive complex	2
bra04120	Ubiquitin mediated proteolysis	2
bra04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	3
vvi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00190	Oxidative phosphorylation	2
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	4
bna03013	Nucleocytoplasmic transport	4
bna03250	Viral life cycle - HIV-1	4
bna00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	3
sly03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	9
sly04141	Protein processing in endoplasmic reticulum	3
sly03040	Spliceosome	2
sly04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00561	Glycerolipid metabolism	2
sot00750	Vitamin B6 metabolism	2
sot01240	Biosynthesis of cofactors	2
sot00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	5
sot04145	Phagosome	4
sot04142	Lysosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	4
sot03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00561	Glycerolipid metabolism	4
nta00566	Sulfoquinovose metabolism	3
nta00564	Glycerophospholipid metabolism	2
nta00565	Ether lipid metabolism	2
nta04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00730	Thiamine metabolism	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	6
nta03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	10
osa04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00620	Pyruvate metabolism	2
osa03008	Ribosome biogenesis in eukaryotes	2
osa03013	Nucleocytoplasmic transport	2
osa03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	3
osa00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	10
tae00400	Phenylalanine, tyrosine and tryptophan biosynthesis	3
tae01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	3
hvu03015	mRNA surveillance pathway	3
hvu03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	3
hvu00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03030	DNA replication	2
hvu03430	Mismatch repair	2
hvu03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	3
sbi04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	4
sbi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	2
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00190	Oxidative phosphorylation	7
bdi04145	Phagosome	5
bdi04142	Lysosome	4
bdi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04141	Protein processing in endoplasmic reticulum	4
cre03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre01240	Biosynthesis of cofactors	4
cre00750	Vitamin B6 metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre01200	Carbon metabolism	3
cre00900	Terpenoid backbone biosynthesis	2

Expression

Expression pattern

Entrez Gene ID^*

7462976

7490647

7472146

100777759

100800303

100791082

25499177

11422523

11432469

816161

830029

816648

103837773

103828088

100264514

100261571

100247119

107949078

107953677

107953678

111208740

106347045

106368109

102614842

102615646

102610500

101251734

101254541

100736432

102600807

102586427

102605090

107807631

107792692

107829132

4347920

4328121

4342555

100282750

100384625

100274576

123095555

123090470

123087435

123403267

123426151

123446794

8060736

8062274

110434624

100836372

100844579

100837401

5728346

5715873

5719445

The preparation time of this page was 0.2 [sec].


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	6	3	3	3	2	3	3	3	3	3	3	3	3	3	3	3	3	3	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7480010 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7480010 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**