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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7487474   probable pyridoxal 5'-phosphate synthase subunit PDX1 
 ppo-r.4   7487474   probable pyridoxal 5'-phosphate synthase subunit PDX1 
 ppo-m.4   7487474   probable pyridoxal 5'-phosphate synthase subunit PDX1 
 ppo-u.5   7470551   pyridoxal 5'-phosphate synthase-like subunit PDX1.2 
 ppo-u.5   7468053   probable pyridoxal 5'-phosphate synthase subunit PDX1 
 gma-u.5   100816306   pyridoxal 5'-phosphate synthase subunit PDX1 
 gma-u.5   732627   pyridoxine biosynthesis protein 
 mtr-u.5   11446851   pyridoxal 5'-phosphate synthase subunit PDX1.3 
 ath-u.5   RSR4   Aldolase-type TIM barrel family protein 
 ath-u.5   PDX1L4   putative PDX1-like protein 4 
 ath-u.5   PDX1.1   pyridoxine biosynthesis 1.1 
 bra-r.6   103855422   pyridoxal 5'-phosphate synthase subunit PDX1.3 
 bra-r.6   103850418   pyridoxal 5'-phosphate synthase subunit PDX1.3 
 vvi-u.5   100242970   pyridoxal 5'-phosphate synthase-like subunit PDX1.2 
 vvi-u.5   100260451   probable pyridoxal 5'-phosphate synthase subunit PDX1 
 ghi-r.1   107891550   probable pyridoxal 5'-phosphate synthase subunit PDX1 
 ghi-r.1   107899534   probable pyridoxal 5'-phosphate synthase subunit PDX1 
 ghi-r.1   107906513   pyridoxal 5'-phosphate synthase-like subunit PDX1.2 
 bna-r.1   106348515   pyridoxal 5'-phosphate synthase-like subunit PDX1.2 
 bna-r.1   106435459   pyridoxal 5'-phosphate synthase subunit PDX1.3 
 bna-r.1   106433826   pyridoxal 5'-phosphate synthase subunit PDX1.3 
 cit-r.1   102608337   probable pyridoxal 5'-phosphate synthase subunit PDX1 
 cit-r.1   102623292   probable pyridoxal 5'-phosphate synthase subunit PDX1 
 cit-r.1   102610004   pyridoxal 5'-phosphate synthase-like subunit PDX1.2 
 sly-u.5   101251664   pyridoxal 5'-phosphate synthase-like subunit PDX1.2 
 sly-u.5   101257782   probable pyridoxal 5'-phosphate synthase subunit PDX1 
 sot-r.1   102588309   pyridoxal 5'-phosphate synthase-like subunit PDX1.2 
 sot-r.1   102590002   probable pyridoxal 5'-phosphate synthase subunit PDX1 
 nta-r.1   107807313   putative pyridoxal 5'-phosphate synthase subunit PDX1 
 nta-r.1   107769831   pyridoxal 5'-phosphate synthase-like subunit PDX1.2 
 nta-r.1   107819695   pyridoxal 5'-phosphate synthase-like subunit PDX1.2 
 osa-u.5   4342162   probable pyridoxal 5'-phosphate synthase subunit PDX1.1 
 osa-u.5   4347937   probable pyridoxal 5'-phosphate synthase subunit PDX1.2 
 zma-u.5   100272732   uncharacterized LOC100272732 
 tae-r.2   123091732   probable pyridoxal 5'-phosphate synthase subunit PDX1.1 
 tae-r.2   123053005   probable pyridoxal 5'-phosphate synthase subunit PDX1.1 
 tae-r.2   123045174   probable pyridoxal 5'-phosphate synthase subunit PDX1.1 
 hvu-r.1   123426398   probable pyridoxal 5'-phosphate synthase subunit PDX1.1 
 hvu-r.1   123448224   probable pyridoxal 5'-phosphate synthase subunit PDX1.1 
 sbi-r.1   8081595   probable pyridoxal 5'-phosphate synthase subunit PDX1.1 
 bdi-r.1   100837310   probable pyridoxal 5'-phosphate synthase subunit PDX1.1 
 bdi-r.1   100842713   probable pyridoxal 5'-phosphate synthase subunit PDX1.1 
 cre-r.1   CHLRE_15g643550v5   uncharacterized protein 

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Top 50 coexpressed genes to 7487474 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7487474 (ppo-u.5 coexpression data)

CoexMap"7487474"


ppoLOC7487474 | Entrez gene ID : 7487474    
Species ppo gma mtr ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 5 2 1 3 2 2 3 3 3 2 2 3 2 1 3 2 1 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00750 [list] [network] Vitamin B6 metabolism (15 genes)
pop01240 [list] [network] Biosynthesis of cofactors (298 genes)
GO BP
GO:0042823 [list] [network] pyridoxal phosphate biosynthetic process  (5 genes)  IEA  
GO:0008615 [list] [network] pyridoxine biosynthetic process  (6 genes)  IEA  
GO:0006520 [list] [network] amino acid metabolic process  (391 genes)  IEA  
GO CC
GO MF
GO:0016843 [list] [network] amine-lyase activity  (3 genes)  IEA  
Protein XP_002322981.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 8,  chlo 1  (predict for XP_002322981.1)
Subcellular
localization
TargetP
other 7  (predict for XP_002322981.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7487474
ppo-r.4
for
7487474
ppo-m.4
for
7487474
ppo-u.5
for
7470551
ppo-u.5
for
7468053
gma-u.5
for
100816306
gma-u.5
for
732627
mtr-u.5
for
11446851
ath-u.5
for
RSR4
ath-u.5
for
PDX1L4
ath-u.5
for
PDX1.1
bra-r.6
for
103855422
bra-r.6
for
103850418
vvi-u.5
for
100242970
vvi-u.5
for
100260451
ghi-r.1
for
107891550
ghi-r.1
for
107899534
ghi-r.1
for
107906513
bna-r.1
for
106348515
bna-r.1
for
106435459
bna-r.1
for
106433826
cit-r.1
for
102608337
cit-r.1
for
102623292
cit-r.1
for
102610004
sly-u.5
for
101251664
sly-u.5
for
101257782
sot-r.1
for
102588309
sot-r.1
for
102590002
nta-r.1
for
107807313
nta-r.1
for
107769831
nta-r.1
for
107819695
osa-u.5
for
4342162
osa-u.5
for
4347937
zma-u.5
for
100272732
tae-r.2
for
123091732
tae-r.2
for
123053005
tae-r.2
for
123045174
hvu-r.1
for
123426398
hvu-r.1
for
123448224
sbi-r.1
for
8081595
bdi-r.1
for
100837310
bdi-r.1
for
100842713
cre-r.1
for
CHLRE_15g643550v5


Ortholog ID: 2709
Species ppo ppo ppo gma gma mtr ath ath ath bra bra vvi vvi ghi ghi ghi bna bna bna cit cit cit sly sly sot sot nta nta nta osa osa zma tae tae tae hvu hvu sbi bdi bdi cre
Symbol LOC7487474 LOC7470551 LOC7468053 LOC100816306 LOC732627 LOC11446851 PDX1L4 PDX1.1 PDX1.2 LOC103855422 LOC103850418 LOC100242970 LOC100260451 LOC107932685 LOC107948587 LOC107890961 LOC106435459 LOC106433826 LOC106405963 LOC102608337 LOC102623292 LOC102610004 LOC101251664 LOC101257782 LOC102588309 LOC102590002 LOC107807313 LOC107819695 LOC107805188 LOC4342162 LOC4347937 LOC100272732 LOC123091732 LOC123045174 LOC123096716 LOC123426398 LOC123448224 LOC8081595 LOC100837310 LOC100842713 CHLRE_15g643550v5
Function* probable pyridoxal 5'-phosphate synthase subunit PDX1 pyridoxal 5'-phosphate synthase-like subunit PDX1.2 probable pyridoxal 5'-phosphate synthase subunit PDX1 pyridoxal 5'-phosphate synthase subunit PDX1 pyridoxine biosynthesis protein pyridoxal 5'-phosphate synthase subunit PDX1.3 putative PDX1-like protein 4 pyridoxine biosynthesis 1.1 pyridoxine biosynthesis 1.2 pyridoxal 5'-phosphate synthase subunit PDX1.3 pyridoxal 5'-phosphate synthase subunit PDX1.3 pyridoxal 5'-phosphate synthase-like subunit PDX1.2 probable pyridoxal 5'-phosphate synthase subunit PDX1 pyridoxal 5'-phosphate synthase-like subunit PDX1.2 probable pyridoxal 5'-phosphate synthase subunit PDX1 probable pyridoxal 5'-phosphate synthase subunit PDX1 pyridoxal 5'-phosphate synthase subunit PDX1.3 pyridoxal 5'-phosphate synthase subunit PDX1.3 pyridoxal 5'-phosphate synthase subunit PDX1.1 probable pyridoxal 5'-phosphate synthase subunit PDX1 probable pyridoxal 5'-phosphate synthase subunit PDX1 pyridoxal 5'-phosphate synthase-like subunit PDX1.2 pyridoxal 5'-phosphate synthase-like subunit PDX1.2 probable pyridoxal 5'-phosphate synthase subunit PDX1 pyridoxal 5'-phosphate synthase-like subunit PDX1.2 probable pyridoxal 5'-phosphate synthase subunit PDX1 putative pyridoxal 5'-phosphate synthase subunit PDX1 pyridoxal 5'-phosphate synthase-like subunit PDX1.2 putative pyridoxal 5'-phosphate synthase subunit PDX1 probable pyridoxal 5'-phosphate synthase subunit PDX1.1 probable pyridoxal 5'-phosphate synthase subunit PDX1.2 uncharacterized LOC100272732 probable pyridoxal 5'-phosphate synthase subunit PDX1.1 probable pyridoxal 5'-phosphate synthase subunit PDX1.1 probable pyridoxal 5'-phosphate synthase subunit PDX1.1 probable pyridoxal 5'-phosphate synthase subunit PDX1.1 probable pyridoxal 5'-phosphate synthase subunit PDX1.1 probable pyridoxal 5'-phosphate synthase subunit PDX1.1 probable pyridoxal 5'-phosphate synthase subunit PDX1.1 probable pyridoxal 5'-phosphate synthase subunit PDX1.1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00750 Vitamin B6 metabolism 2
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 11
ppo04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 5
ppo00630 Glyoxylate and dicarboxylate metabolism 4
ppo00250 Alanine, aspartate and glutamate metabolism 3
ppo00260 Glycine, serine and threonine metabolism 3
ppo01210 2-Oxocarboxylic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00270 Cysteine and methionine metabolism 2
gma00543 Exopolysaccharide biosynthesis 2
gma00920 Sulfur metabolism 2
gma01200 Carbon metabolism 2
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma00750 Vitamin B6 metabolism 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01240 Biosynthesis of cofactors 5
mtr00053 Ascorbate and aldarate metabolism 3
mtr01200 Carbon metabolism 3
mtr00520 Amino sugar and nucleotide sugar metabolism 2
mtr01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 4
ath00630 Glyoxylate and dicarboxylate metabolism 3
ath04146 Peroxisome 2
ath00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 9
ath00630 Glyoxylate and dicarboxylate metabolism 6
ath00710 Carbon fixation by Calvin cycle 5
ath00260 Glycine, serine and threonine metabolism 3
ath04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01240 Biosynthesis of cofactors 4
bra00860 Porphyrin metabolism 2
bra00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00750 Vitamin B6 metabolism 3
bra01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 8
vvi03040 Spliceosome 3
vvi04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00750 Vitamin B6 metabolism 3
ghi01240 Biosynthesis of cofactors 3
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01240 Biosynthesis of cofactors 7
ghi00750 Vitamin B6 metabolism 6
ghi00230 Purine metabolism 3
ghi00250 Alanine, aspartate and glutamate metabolism 3
ghi00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01240 Biosynthesis of cofactors 8
ghi00750 Vitamin B6 metabolism 6
ghi00230 Purine metabolism 3
ghi00250 Alanine, aspartate and glutamate metabolism 3
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04016 MAPK signaling pathway - plant 4
bna04075 Plant hormone signal transduction 4
bna00750 Vitamin B6 metabolism 3
bna01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04016 MAPK signaling pathway - plant 4
bna04075 Plant hormone signal transduction 4
bna00750 Vitamin B6 metabolism 3
bna01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00600 Sphingolipid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 5
sly03040 Spliceosome 2
sly04144 Endocytosis 2
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot04141 Protein processing in endoplasmic reticulum 3
sot04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00920 Sulfur metabolism 5
sot01320 Sulfur cycle 4
sot01200 Carbon metabolism 4
sot00940 Phenylpropanoid biosynthesis 3
sot01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01240 Biosynthesis of cofactors 6
nta00260 Glycine, serine and threonine metabolism 4
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta01230 Biosynthesis of amino acids 2
nta00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 2
nta00750 Vitamin B6 metabolism 2
nta01240 Biosynthesis of cofactors 2
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01240 Biosynthesis of cofactors 6
nta00260 Glycine, serine and threonine metabolism 4
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta01230 Biosynthesis of amino acids 2
nta00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01240 Biosynthesis of cofactors 4
osa01230 Biosynthesis of amino acids 3
osa00750 Vitamin B6 metabolism 2
osa00230 Purine metabolism 2
osa01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01240 Biosynthesis of cofactors 3
osa00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00750 Vitamin B6 metabolism 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 8
tae00750 Vitamin B6 metabolism 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 8
tae01200 Carbon metabolism 7
tae00710 Carbon fixation by Calvin cycle 6
tae00750 Vitamin B6 metabolism 6
tae01240 Biosynthesis of cofactors 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
tae00750 Vitamin B6 metabolism 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 3
hvu00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01240 Biosynthesis of cofactors 4
sbi00260 Glycine, serine and threonine metabolism 3
sbi01200 Carbon metabolism 3
sbi01230 Biosynthesis of amino acids 3
sbi00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00750 Vitamin B6 metabolism 2
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00750 Vitamin B6 metabolism 2
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 8
cre01240 Biosynthesis of cofactors 5
cre00290 Valine, leucine and isoleucine biosynthesis 3
cre01210 2-Oxocarboxylic acid metabolism 3
cre00770 Pantothenate and CoA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 7487474 7470551 7468053 100816306 732627 11446851 818400 818402 820850 103855422 103850418 100242970 100260451 107932685 107948587 107890961 106435459 106433826 106405963 102608337 102623292 102610004 101251664 101257782 102588309 102590002 107807313 107819695 107805188 4342162 4347937 100272732 123091732 123045174 123096716 123426398 123448224 8081595 100837310 100842713 66056484
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