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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7494362   DNA-binding protein RHL1 
 ppo-r.4   7494362   DNA-binding protein RHL1 
 ppo-m.4   7494362   DNA-binding protein RHL1 
 gma-u.5   100817620   DNA-binding protein RHL1 
 gma-u.5   100800543   DNA-binding protein RHL1 
 mtr-u.5   11422248   DNA-binding protein RHL1 
 ath-u.5   RHL1   root hair initiation protein root hairless 1 (RHL1) 
 vvi-u.5   100256840   DNA-binding protein RHL1 
 sly-u.5   101260519   DNA-binding protein RHL1 
 osa-u.5   4342516   DNA-binding protein RHL1 
 osa-u.5   9272197   uncharacterized LOC9272197 
 zma-u.5   100280291   uncharacterized LOC100280291 

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Top 50 coexpressed genes to 7494362 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7494362 (ppo-u.5 coexpression data)

CoexMap"7494362"


ppoLOC7494362 | Entrez gene ID : 7494362    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 2 1 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0042023 [list] [network] DNA endoreduplication  (3 genes)  IEA  
GO CC
GO MF
GO:0003677 [list] [network] DNA binding  (2205 genes)  IEA  
Protein XP_024455865.2 [sequence] [blastp]
XP_052308457.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto 1,  plas 1,  cyto_plas 1  (predict for XP_024455865.2)
nucl 8,  cyto 1  (predict for XP_052308457.1)
Subcellular
localization
TargetP
other 8  (predict for XP_024455865.2)
other 8  (predict for XP_052308457.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7494362

.
ppo-r.4
for
7494362

.
ppo-m.4
for
7494362

.
gma-u.5
for
100817620

.
gma-u.5
for
100800543

.
mtr-u.5
for
11422248

.
ath-u.5
for
RHL1

.
vvi-u.5
for
100256840

.
sly-u.5
for
101260519

.
osa-u.5
for
4342516

.
osa-u.5
for
9272197

.
zma-u.5
for
100280291

.


Ortholog ID: 9830
Species ath gma gma sly osa osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol RHL1 LOC100800543 LOC100817620 LOC101260519 LOC9272197 LOC4342516 LOC100280291 LOC103833010 LOC100256840 LOC7494362 LOC11422248 LOC123149883 LOC123165756 LOC123407425 LOC107928346 LOC107909093 LOC111197735 LOC106360541 CHLRE_13g576500v5 LOC8066392 LOC102598969 LOC102611651 LOC100842808 LOC107798097 LOC107821159
Function* root hair initiation protein root hairless 1 (RHL1) DNA-binding protein RHL1 DNA-binding protein RHL1 DNA-binding protein RHL1 uncharacterized LOC9272197 DNA-binding protein RHL1 uncharacterized LOC100280291 DNA-binding protein RHL1 DNA-binding protein RHL1 DNA-binding protein RHL1 DNA-binding protein RHL1 DNA-binding protein RHL1 DNA-binding protein RHL1 DNA-binding protein RHL1 DNA-binding protein RHL1 DNA-binding protein RHL1 DNA-binding protein RHL1-like DNA-binding protein RHL1-like uncharacterized protein DNA-binding protein RHL1 DNA-binding protein RHL1 DNA-binding protein RHL1 DNA-binding protein RHL1 DNA-binding protein RHL1 DNA-binding protein RHL1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 8
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 3
ppo03440 Homologous recombination 3
ppo03460 Fanconi anemia pathway 3
ppo03420 Nucleotide excision repair 2
ppo03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00380 Tryptophan metabolism 2
tae00630 Glyoxylate and dicarboxylate metabolism 2
tae01200 Carbon metabolism 2
tae04016 MAPK signaling pathway - plant 2
tae04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 4
ghi04075 Plant hormone signal transduction 4
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 4
ghi04075 Plant hormone signal transduction 4
ghi03008 Ribosome biogenesis in eukaryotes 3
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 3
nta01200 Carbon metabolism 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 3
nta03018 RNA degradation 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 841258 100800543 100817620 101260519 9272197 4342516 100280291 103833010 100256840 7494362 11422248 123149883 123165756 123407425 107928346 107909093 111197735 106360541 5719244 8066392 102598969 102611651 100842808 107798097 107821159
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